Mercurial > repos > devteam > emboss_5
comparison emboss_dreg.xml @ 10:d49956b87f7e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
| author | iuc |
|---|---|
| date | Wed, 08 Feb 2017 12:42:22 -0500 |
| parents | |
| children | 8992d258e42f |
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| 9:511429456d3c | 10:d49956b87f7e |
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| 1 <tool id="EMBOSS: dreg27" name="dreg" version="5.0.0"> | |
| 2 <description>Regular expression search of a nucleotide sequence</description> | |
| 3 <macros> | |
| 4 <import>macros.xml</import> | |
| 5 </macros> | |
| 6 <expand macro="requirements" /> | |
| 7 <command>dreg -sequence '$input1' -outfile '$out_file1' -pattern '$pattern' -raccshow3 "no" -rusashow3 "no" -rdesshow3 "no" -auto</command> | |
| 8 <inputs> | |
| 9 <param name="input1" type="data" format="data" label="Sequence 1" /> | |
| 10 <param name="pattern" type="text" value="(AUG)" label="Regular expression pattern" /> | |
| 11 </inputs> | |
| 12 <outputs> | |
| 13 <data name="out_file1" format="dreg" /> | |
| 14 </outputs> | |
| 15 <!-- tests not possible since dreg timestamps output file --> | |
| 16 <help> | |
| 17 You can view the original documentation here_. | |
| 18 | |
| 19 .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/dreg.html | |
| 20 </help> | |
| 21 <expand macro="citations" /> | |
| 22 </tool> |