Mercurial > repos > devteam > emboss_5
comparison emboss_iep.xml @ 10:d49956b87f7e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
| author | iuc |
|---|---|
| date | Wed, 08 Feb 2017 12:42:22 -0500 |
| parents | |
| children | 832c20329690 |
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| 9:511429456d3c | 10:d49956b87f7e |
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| 1 <tool id="EMBOSS: iep45" name="iep" version="5.0.0.1"> | |
| 2 <description>Calculates the isoelectric point of a protein</description> | |
| 3 <macros> | |
| 4 <import>macros.xml</import> | |
| 5 </macros> | |
| 6 <expand macro="requirements" /> | |
| 7 <command>iep -sequence '$input1' -outfile '$out_file1' -step $step -amino $amino -graph png -termini $termini -auto</command> | |
| 8 <inputs> | |
| 9 <param name="input1" type="data" format="data" label="Sequences" /> | |
| 10 <param name="step" type="float" value="0.5" label="Step value for pH" /> | |
| 11 <param name="amino" type="integer" value="1" label="Number of N-termini" /> | |
| 12 <param name="termini" type="select" label="Include charge at N and C terminus"> | |
| 13 <option value="yes">Yes</option> | |
| 14 <option value="no">No</option> | |
| 15 </param> | |
| 16 </inputs> | |
| 17 <outputs> | |
| 18 <data name="out_file1" format="iep" /> | |
| 19 </outputs> | |
| 20 <tests> | |
| 21 <test> | |
| 22 <param name="input1" value="2.fasta"/> | |
| 23 <param name="step" value="0.5"/> | |
| 24 <param name="amino" value="1"/> | |
| 25 <param name="termini" value="yes"/> | |
| 26 <output name="out_file1" file="emboss_iep_out.iep"/> | |
| 27 </test> | |
| 28 </tests> | |
| 29 <help> | |
| 30 You can view the original documentation here_. | |
| 31 | |
| 32 .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/iep.html | |
| 33 </help> | |
| 34 <expand macro="citations" /> | |
| 35 </tool> |