Mercurial > repos > devteam > emboss_5
comparison emboss_newcpgseek.xml @ 10:d49956b87f7e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
| author | iuc |
|---|---|
| date | Wed, 08 Feb 2017 12:42:22 -0500 |
| parents | |
| children | 8992d258e42f |
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| 9:511429456d3c | 10:d49956b87f7e |
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| 1 <tool id="EMBOSS: newcpgseek58" name="newcpgseek" version="5.0.0.1"> | |
| 2 <description>Reports CpG rich region</description> | |
| 3 <macros> | |
| 4 <import>macros.xml</import> | |
| 5 </macros> | |
| 6 <expand macro="requirements" /> | |
| 7 <command>newcpgseek -sequence '$input1' -outfile '$out_file1' -score $score -auto</command> | |
| 8 <inputs> | |
| 9 <param name="input1" type="data" format="fasta" label="Sequence" /> | |
| 10 <param name="score" type="integer" value="17" label="CpG score" /> | |
| 11 </inputs> | |
| 12 <outputs> | |
| 13 <data name="out_file1" format="newcpgseek" /> | |
| 14 </outputs> | |
| 15 <tests> | |
| 16 <test> | |
| 17 <param name="input1" value="2.fasta"/> | |
| 18 <param name="score" value="17"/> | |
| 19 <output name="out_file1" file="emboss_newcpgseek_out.newcpgseek"/> | |
| 20 </test> | |
| 21 </tests> | |
| 22 <help> | |
| 23 .. class:: warningmark | |
| 24 | |
| 25 The input dataset needs to be sequences. | |
| 26 | |
| 27 ----- | |
| 28 | |
| 29 You can view the original documentation here_. | |
| 30 | |
| 31 .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/newcpgseek.html | |
| 32 </help> | |
| 33 <expand macro="citations" /> | |
| 34 </tool> |