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comparison emboss_octanol.xml @ 10:d49956b87f7e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
author iuc
date Wed, 08 Feb 2017 12:42:22 -0500
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children 8992d258e42f
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9:511429456d3c 10:d49956b87f7e
1 <tool id="EMBOSS: octanol63" name="octanol" version="5.0.0.1">
2 <!-- graphics output with filename, no functional tests added -->
3 <description>Displays protein hydropathy</description>
4 <macros>
5 <import>macros.xml</import>
6 </macros>
7 <expand macro="requirements" />
8 <command>perl '$__tool_directory__/emboss_single_outputfile_wrapper.pl' octanol -sequence '$input1' -graph png -goutfile '$out_file1' -width $width -octanolplot $octanolplot -interfaceplot $interfaceplot
9 -differenceplot $differenceplot -auto</command>
10 <inputs>
11 <param name="input1" type="data" format="data" label="Sequences" />
12 <param name="width" type="integer" value="19" label="Window size" />
13 <param name="octanolplot" type="select" label="Display the octanol plot">
14 <option value="no">No</option>
15 <option value="yes">Yes</option>
16 </param>
17 <param name="interfaceplot" type="select" label="Display the interface plot">
18 <option value="no">No</option>
19 <option value="yes">Yes</option>
20 </param>
21 <param name="differenceplot" type="select" label="Display the difference plot">
22 <option value="yes">Yes</option>
23 <option value="no">No</option>
24 </param>
25 </inputs>
26 <outputs>
27 <data name="out_file1" format="png" />
28 </outputs>
29 <help>
30 You can view the original documentation here_.
31
32 .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/octanol.html
33 </help>
34 <expand macro="citations" />
35 </tool>