Mercurial > repos > devteam > emboss_5
comparison emboss_pepinfo.xml @ 10:d49956b87f7e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
| author | iuc |
|---|---|
| date | Wed, 08 Feb 2017 12:42:22 -0500 |
| parents | |
| children | 8992d258e42f |
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| 9:511429456d3c | 10:d49956b87f7e |
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| 1 <tool id="EMBOSS: pepinfo69" name="pepinfo" version="5.0.0.1"> | |
| 2 <!-- puts file info in output files --> | |
| 3 <description>Plots simple amino acid properties in parallel</description> | |
| 4 <macros> | |
| 5 <import>macros.xml</import> | |
| 6 </macros> | |
| 7 <expand macro="requirements" /> | |
| 8 <command>perl '$__tool_directory__/emboss_single_outputfile_wrapper.pl' pepinfo -sequence '$input1' -outfile '$out_file1' -goutfile '$out_file2' -graph png -hwindow $hwindow $plot_type -auto</command> | |
| 9 <inputs> | |
| 10 <param name="input1" type="data" format="data" label="Sequence" /> | |
| 11 <param name="hwindow" type="integer" value="9" label="Window size for hydropathy averaging" /> | |
| 12 <param name="plot_type" type="select" label="Choose a plot type"> | |
| 13 <option value="-generalplot yes -hydropathyplot no">Histogram of general properties</option> | |
| 14 <option value="-generalplot no -hydropathyplot yes">Graphs of hydropathy</option> | |
| 15 </param> | |
| 16 </inputs> | |
| 17 <outputs> | |
| 18 <data name="out_file1" format="pepinfo" /> | |
| 19 <data name="out_file2" format="png" /> | |
| 20 </outputs> | |
| 21 <help> | |
| 22 You can view the original documentation here_. | |
| 23 | |
| 24 .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/pepinfo.html | |
| 25 </help> | |
| 26 <expand macro="citations" /> | |
| 27 </tool> |