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comparison emboss_prettyseq.xml @ 10:d49956b87f7e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
author iuc
date Wed, 08 Feb 2017 12:42:22 -0500
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children 8992d258e42f
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9:511429456d3c 10:d49956b87f7e
1 <tool id="EMBOSS: prettyseq80" name="prettyseq" version="5.0.0.1">
2 <description>Output sequence with translated ranges</description>
3 <macros>
4 <import>macros.xml</import>
5 </macros>
6 <expand macro="requirements" />
7 <command>prettyseq -sequence '$input1' -outfile '$out_file1' -ruler $ruler -plabel $plabel -nlabel $nlabel -width $width -auto</command>
8 <inputs>
9 <param name="input1" type="data" format="fasta" label="Sequence" />
10 <param name="ruler" type="select" label="Add a ruler">
11 <option value="yes">Yes</option>
12 <option value="no">No</option>
13 </param>
14 <param name="plabel" type="select" label="Number translations">
15 <option value="yes">Yes</option>
16 <option value="no">No</option>
17 </param>
18 <param name="nlabel" type="select" label="Number DNA sequence">
19 <option value="yes">Yes</option>
20 <option value="no">No</option>
21 </param>
22 <param name="width" type="integer" value="60" min="10" label="Width of screen" />
23 </inputs>
24 <outputs>
25 <data name="out_file1" format="prettyseq" />
26 </outputs>
27 <tests>
28 <test>
29 <param name="input1" value="2.fasta"/>
30 <param name="ruler" value="yes"/>
31 <param name="plabel" value="yes"/>
32 <param name="nlabel" value="yes"/>
33 <param name="width" value="60"/>
34 <output name="out_file1" file="emboss_prettyseq_out.prettyseq"/>
35 </test>
36 </tests>
37 <help>
38 .. class:: warningmark
39
40 The input dataset needs to be sequences.
41
42 -----
43
44 You can view the original documentation here_.
45
46 .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/prettyseq.html
47 </help>
48 <expand macro="citations" />
49 </tool>