Mercurial > repos > devteam > emboss_5

comparison emboss_single_outputfile_wrapper.pl @ 10:d49956b87f7e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
author iuc
date Wed, 08 Feb 2017 12:42:22 -0500
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children dba489bfcd62
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9:511429456d3c 10:d49956b87f7e
1 #! /usr/bin/perl -w
2 use strict;
3 use File::Copy;
4
5 my $cmd_string = join (" ",@ARGV);
6 my $results = `$cmd_string`;
7 my @files = split("\n",$results);
8 my $fileNameOut = $ARGV[6];
9 my ($drive, $outputDir, $file) = File::Spec->splitpath( $fileNameOut );
10 my $destination = $fileNameOut;
11
12 foreach my $thisLine (@files)
13 {
14 if ($thisLine =~ /Created /)
15 {
16 $thisLine =~ /[\w|\.]+$/;
17 $thisLine =$&;
18 #print "outfile: $thisLine\n";
19 #there is only one file to move, so we can quit after finding it
20 move($drive.$outputDir.$thisLine,$fileNameOut);
21 exit(1);
22 }
23 else
24 {
25 print $thisLine,"\n";
26 }
27 }