Mercurial > repos > devteam > emboss_5
diff emboss_compseq.xml @ 10:d49956b87f7e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
author | iuc |
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date | Wed, 08 Feb 2017 12:42:22 -0500 |
parents | |
children | 8992d258e42f |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/emboss_compseq.xml Wed Feb 08 12:42:22 2017 -0500 @@ -0,0 +1,41 @@ +<tool id="EMBOSS: compseq14" name="compseq" version="5.0.0.1"> + <description>Count composition of dimer/trimer/etc words in a sequence</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements" /> + <command>compseq -sequence '$input1' -outfile '$out_file1' -word $word -frame $frame -auto</command> + <inputs> + <param name="input1" type="data" format="fasta" label="On query" /> + <param name="word" type="integer" value="2" label="Size of word (window) to count" /> + <param name="frame" type="select" label="Frame to inspect"> + <option value="0">All Frames</option> + <option value="1">Frame 1</option> + <option value="2">Frame 2</option> + <option value="3">Frame 3</option> + </param> + </inputs> + <outputs> + <data name="out_file1" format="compseq" /> + </outputs> + <tests> + <test> + <param name="input1" value="2.fasta"/> + <param name="word" value="2"/> + <param name="frame" value="0"/> + <output name="out_file1" file="emboss_compseq_out.compseq"/> + </test> + </tests> + <help> +.. class:: warningmark + +The input dataset needs to be sequences. + +----- + + You can view the original documentation here_. + + .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/compseq.html + </help> + <expand macro="citations" /> +</tool>