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diff emboss_infoseq.xml @ 10:d49956b87f7e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
author iuc
date Wed, 08 Feb 2017 12:42:22 -0500
parents
children 8992d258e42f
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/emboss_infoseq.xml	Wed Feb 08 12:42:22 2017 -0500
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+<tool id="EMBOSS: infoseq46" name="infoseq" version="5.0.0">
+  <!-- info contains file information always -->
+  <description>Displays some simple information about sequences</description>
+  <macros>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="requirements" />
+  <code file="emboss_format_corrector.py" />
+  <command>infoseq -sequence '$input1' -outfile '$out_file1' -html $html_out1 -heading $heading -usa $usa -name $disname -accession $accession -gi $gi -version $version -type $type -length $length -pgc
+  $pgc -description $description -auto</command>
+  <inputs>
+    <param name="input1" type="data" format="data" label="Sequences" />
+    <param name="html_out1" type="select" label="Format output as an HTML table">
+      <option value="no">No</option>
+      <option value="yes">Yes</option>
+    </param>
+    <param name="heading" type="select" label="Display column headings">
+      <option value="yes">Yes</option>
+      <option value="no">No</option>
+    </param>
+    <param name="usa" type="select" label="Display the USA of the sequence">
+      <option value="yes">Yes</option>
+      <option value="no">No</option>
+    </param>
+    <param name="disname" type="select" label="Display 'name' column">
+      <option value="yes">Yes</option>
+      <option value="no">No</option>
+    </param>
+    <param name="accession" type="select" label="Display 'accession' column">
+      <option value="yes">Yes</option>
+      <option value="no">No</option>
+    </param>
+    <param name="gi" type="select" label="Display 'GI' column">
+      <option value="no">No</option>
+      <option value="yes">Yes</option>
+    </param>
+    <param name="version" type="select" label="Display 'version' column">
+      <option value="no">No</option>
+      <option value="yes">Yes</option>
+    </param>
+    <param name="type" type="select" label="Display 'type' column">
+      <option value="yes">Yes</option>
+      <option value="no">No</option>
+    </param>
+    <param name="length" type="select" label="Display 'length' column">
+      <option value="yes">Yes</option>
+      <option value="no">No</option>
+    </param>
+    <param name="pgc" type="select" label="Display 'percent GC content' column">
+      <option value="yes">Yes</option>
+      <option value="no">No</option>
+    </param>
+    <param name="description" type="select" label="Display 'description' column">
+      <option value="yes">Yes</option>
+      <option value="no">No</option>
+    </param>
+  </inputs>
+  <outputs>
+    <data name="out_file1" format="txt" />
+  </outputs>
+  <help>
+    You can view the original documentation here_.
+
+    .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/infoseq.html
+  </help>
+  <expand macro="citations" />
+</tool>