<tool id="EMBOSS: chips10" name="chips" version="5.0.0">
  <description>Codon usage statistics</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements" />
  <command>chips -seqall '$input1' -outfile '$out_file1' -sum $sum -auto</command>
  <inputs>
    <param name="input1" type="data" format="data" label="On query" />
    <param name="sum" type="select" label="Sum codons over all sequences">
      <option value="yes">Yes</option>
      <option value="no">No</option>
    </param>
  </inputs>
  <outputs>
    <data name="out_file1" format="chips" />
  </outputs>
  <tests>
    <test>
      <param name="input1" value="2.fasta"/>
      <param name="sum" value="yes"/>
      <output name="out_file1" file="emboss_chips_out.chips"/>
    </test>
  </tests>
  <help>
    You can view the original documentation here_.

    .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/chips.html
  </help>
  <expand macro="citations" />
</tool>