<tool id="EMBOSS: freak36" name="freak" version="5.0.0.1">
  <description>Residue/base frequency table or plot</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements" />
  <command>freak -seqall '$input1' -outfile '$out_file1' -window $window -letters '$letters' -graph png -step $step -auto</command>
  <inputs>
    <param name="input1" type="data" format="data" label="Sequences" />
    <param name="letters" type="text" value="gc" label="Residue letters" />
    <param name="step" type="integer" value="1" label="Stepping value" />
    <param name="window" type="integer" value="30" label="Averaging window" />
  </inputs>
  <outputs>
    <data name="out_file1" format="freak" />
  </outputs>
  <tests>
    <test>
      <param name="input1" value="2.fasta"/>
      <param name="letters" value="gc"/>
      <param name="step" value="1"/>
      <param name="window" value="30"/>
      <output name="out_file1" file="emboss_freak_out.freak"/>
    </test>
  </tests>
  <help>
    You can view the original documentation here_.

    .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/freak.html
  </help>
  <expand macro="citations" />
</tool>