Mercurial > repos > devteam > emboss_5
changeset 5:2cf967772a40
Fix for emboss_format_corrector.py. Datatypes should be changed before the job is run.
| author | Daniel Blankenberg <dan@bx.psu.edu> |
|---|---|
| date | Fri, 11 Oct 2013 14:10:00 -0400 |
| parents | c159a6ded912 |
| children | a6aa7f3cbe7d |
| files | emboss_5/emboss_format_corrector.py |
| diffstat | 1 files changed, 1 insertions(+), 4 deletions(-) [+] |
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--- a/emboss_5/emboss_format_corrector.py Wed Jun 19 12:22:14 2013 -0400 +++ b/emboss_5/emboss_format_corrector.py Fri Oct 11 14:10:00 2013 -0400 @@ -1,12 +1,9 @@ #EMBOSS format corrector import operator -#from galaxy import datatypes -#Properly set file formats after job run -def exec_after_process( app, inp_data, out_data, param_dict,tool, stdout, stderr): #Properly set file formats before job run -#def exec_before_job(trans, inp_data, out_data, param_dict,tool): +def exec_before_job( app, inp_data=None, out_data=None, tool=None, param_dict=None ): #why isn't items an ordered list? items = out_data.items() #lets sort it ourselves....