Mercurial > repos > devteam > fasta_nucleotide_changer

comparison fasta_nucleotide_changer.xml @ 1:2f868bfbe9de

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Removed excess version attributes.
author Dave Bouvier <dave@bx.psu.edu>
date Tue, 03 Dec 2013 12:36:13 -0500
parents 4b41e3076a50
children f81d4362b6c1
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0:4b41e3076a50 1:2f868bfbe9de
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.0.13">fastx_toolkit</requirement> 4 <requirement type="package" version="0.0.13">fastx_toolkit</requirement>
5 </requirements> 5 </requirements>
6 <command>zcat -f '$input' | fasta_nucleotide_changer -$mode -v -o $output</command> 6 <command>zcat -f '$input' | fasta_nucleotide_changer -$mode -v -o $output</command>
7 <inputs> 7 <inputs>
8 <param format="fasta" version="1.0.0" name="input" type="data" label="Library to convert" /> 8 <param format="fasta" name="input" type="data" label="Library to convert" />
9 9
10 <param version="1.0.0" name="mode" type="select" label="Convert"> 10 <param name="mode" type="select" label="Convert">
11 <option value="d">RNA to DNA (U to T)</option> 11 <option value="d">RNA to DNA (U to T)</option>
12 <option value="r">DNA to RNA (T to U)</option> 12 <option value="r">DNA to RNA (T to U)</option>
13 </param> 13 </param>
14 </inputs> 14 </inputs>
15 15
16 <!-- 16 <!--
17 Functional tests with param value starting with - fail. 17 Functional tests with param value starting with - fail.
18 --> 18 -->
19 <tests> 19 <tests>
20 <test> 20 <test>
21 <param version="1.0.0" name="input" value="fasta_nuc_changer1.fasta" /> 21 <param name="input" value="fasta_nuc_changer1.fasta" />
22 <param version="1.0.0" name="mode" value="r" /> 22 <param name="mode" value="r" />
23 <output version="1.0.0" name="output" file="fasta_nuc_change1.out" /> 23 <param name="output" file="fasta_nuc_change1.out" />
24 </test> 24 </test>
25 <test> 25 <test>
26 <param version="1.0.0" name="input" value="fasta_nuc_changer2.fasta" /> 26 <param name="input" value="fasta_nuc_changer2.fasta" />
27 <param version="1.0.0" name="mode" value="d" /> 27 <param name="mode" value="d" />
28 <output version="1.0.0" name="output" file="fasta_nuc_change2.out" /> 28 <param name="output" file="fasta_nuc_change2.out" />
29 </test> 29 </test>
30 </tests> 30 </tests>
31 31
32 <outputs> 32 <outputs>
33 <data format="input" version="1.0.0" name="output" metadata_source="input" /> 33 <data format="input" name="output" metadata_source="input" />
34 </outputs> 34 </outputs>
35 35
36 <help> 36 <help>
37 **What it does** 37 **What it does**
38 38