Mercurial > repos > devteam > fasta_to_tabular
comparison fasta_to_tabular.xml @ 3:e7ed3c310b74 draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fasta_to_tabular commit 34a6c9f94a5722bb7d2f887618aafa410a770e91"
| author | devteam |
|---|---|
| date | Mon, 02 Mar 2020 06:47:26 -0500 |
| parents | 091edad7622f |
| children |
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| 2:091edad7622f | 3:e7ed3c310b74 |
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| 6 <command> | 6 <command> |
| 7 python '$__tool_directory__/fasta_to_tabular.py' '$input' '$output' $keep_first $descr_columns | 7 python '$__tool_directory__/fasta_to_tabular.py' '$input' '$output' $keep_first $descr_columns |
| 8 </command> | 8 </command> |
| 9 <inputs> | 9 <inputs> |
| 10 <param name="input" type="data" format="fasta" label="Convert these sequences"/> | 10 <param name="input" type="data" format="fasta" label="Convert these sequences"/> |
| 11 <param name="descr_columns" type="integer" value="1" min="1" label="How many columns to divide title string into?" help="Typically 2 to take the ID (first word) and decription (rest) as two columns, or 1 to give a single column"> | 11 <param name="descr_columns" type="integer" value="1" min="1" label="How many columns to divide title string into?" help="Typically 2 to take the ID (first word) and decription (rest) as two columns, or 1 to give a single column"/> |
| 12 </param> | 12 <param name="keep_first" type="integer" value="0" min="0" label="How many title characters to keep?" help="Applies only to the first column taken from the title string ('0' = keep the whole thing), useful when your sequence identifiers are all the same length."/> |
| 13 <param name="keep_first" type="integer" value="0" min="0" label="How many title characters to keep?" help="Applies only to the first column taken from the title string ('0' = keep the whole thing), useful when your sequence identifiers are all the same length."> | |
| 14 </param> | |
| 15 </inputs> | 13 </inputs> |
| 16 <outputs> | 14 <outputs> |
| 17 <data name="output" format="tabular"/> | 15 <data name="output" format="tabular"/> |
| 18 </outputs> | 16 </outputs> |
| 19 <tests> | 17 <tests> |