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comparison fastq_combiner.xml @ 3:b05e39b9c170 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/galaxy_sequence_utils/fastq_combiner commit 31edb920789fbd080260f853bc856be72fa7cfa8"
author devteam
date Fri, 01 Nov 2019 13:23:12 -0400
parents 56389130cb63
children f1dc2a761c30
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2:56389130cb63 3:b05e39b9c170
1 <tool id="fastq_combiner" name="Combine FASTA and QUAL" version="1.1.1"> 1 <tool id="fastq_combiner" name="Combine FASTA and QUAL" version="1.1.1">
2 <description>into FASTQ</description> 2 <description>into FASTQ</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.1.1">galaxy_sequence_utils</requirement> 4 <requirement type="package" version="1.1.1">galaxy_sequence_utils</requirement>
5 </requirements> 5 </requirements>
6 <edam_topics>
7 <edam_topic>topic_0622</edam_topic>
8 </edam_topics>
9 <edam_operations>
10 <edam_operation>operation_3436</edam_operation>
11 </edam_operations>
6 <command><![CDATA[ 12 <command><![CDATA[
7 gx-fastq-combiner '$fasta_file' '${fasta_file.extension}' '$qual_file' '${qual_file.extension}' '$output_file' $force_quality_encoding 13 gx-fastq-combiner '$fasta_file' '${fasta_file.extension}' '$qual_file' '${qual_file.extension}' '$output_file' $force_quality_encoding
8 ]]></command> 14 ]]></command>
9 <inputs> 15 <inputs>
10 <param name="fasta_file" type="data" format="fasta,csfasta" label="FASTA File" /> 16 <param name="fasta_file" type="data" format="fasta,csfasta" label="FASTA File" />