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comparison fastq_manipulation.xml @ 3:7861f3b10c68 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/galaxy_sequence_utils/fastq_manipulation commit 31edb920789fbd080260f853bc856be72fa7cfa8"
author devteam
date Fri, 01 Nov 2019 13:24:05 -0400
parents 4ac14b275aca
children 5b87038565bb
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2:4ac14b275aca 3:7861f3b10c68
1 <tool id="fastq_manipulation" name="Manipulate FASTQ" version="1.1.1"> 1 <tool id="fastq_manipulation" name="Manipulate FASTQ" version="1.1.1">
2 <options sanitize="false" /> <!-- This tool uses a file to rely all parameter information (actually a dynamically generated python module), we can safely not sanitize any parameters --> 2 <options sanitize="false" />
3 <!-- This tool uses a file to rely all parameter information (actually a dynamically generated python module), we can safely not sanitize any parameters -->
3 <description>reads on various attributes</description> 4 <description>reads on various attributes</description>
4 <requirements> 5 <requirements>
5 <requirement type="package" version="1.1.1">galaxy_sequence_utils</requirement> 6 <requirement type="package" version="1.1.1">galaxy_sequence_utils</requirement>
6 </requirements> 7 </requirements>
8 <edam_topics>
9 <edam_topic>topic_0622</edam_topic>
10 </edam_topics>
11 <edam_operations>
12 <edam_operation>operation_0233</edam_operation>
13 </edam_operations>
7 <command><![CDATA[ 14 <command><![CDATA[
8 gx-fastq-manipulation '$input_file' '$fastq_manipulation_file' '$output_file' '$output_file.files_path' '${input_file.extension[len('fastq'):]}' 15 gx-fastq-manipulation '$input_file' '$fastq_manipulation_file' '$output_file' '$output_file.files_path' '${input_file.extension[len('fastq'):]}'
9 ]]></command> 16 ]]></command>
10 <configfiles> 17 <configfiles>
11 <configfile name="fastq_manipulation_file"><![CDATA[##create an importable module 18 <configfile name="fastq_manipulation_file"><![CDATA[##create an importable module