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comparison fastq_manipulation.xml @ 5:e30352e889fe draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/galaxy_sequence_utils/fastq_manipulation commit bb5df9e62585e12f08dfc0a9f86eec8e205b4845
author iuc
date Fri, 04 Oct 2024 10:34:44 +0000
parents 5b87038565bb
children
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4:5b87038565bb 5:e30352e889fe
1 <tool id="fastq_manipulation" name="Manipulate FASTQ" version="@TOOL_VERSION@"> 1 <tool id="fastq_manipulation" name="Manipulate FASTQ" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
2 <options sanitize="false" />
3 <!-- This tool uses a file to rely all parameter information (actually a dynamically generated python module), we can safely not sanitize any parameters --> 2 <!-- This tool uses a file to rely all parameter information (actually a dynamically generated python module), we can safely not sanitize any parameters -->
4 <description>reads on various attributes</description> 3 <description>reads on various attributes</description>
5 <macros> 4 <macros>
6 <import>macros.xml</import> 5 <import>macros.xml</import>
7 </macros> 6 </macros>
8 <expand macro="requirements"/> 7 <options sanitize="false" />
9 <edam_topics> 8 <edam_topics>
10 <edam_topic>topic_0622</edam_topic> 9 <edam_topic>topic_0622</edam_topic>
11 </edam_topics> 10 </edam_topics>
12 <edam_operations> 11 <edam_operations>
13 <edam_operation>operation_0233</edam_operation> 12 <edam_operation>operation_0233</edam_operation>
14 </edam_operations> 13 </edam_operations>
14 <expand macro="requirements"/>
15 <command><![CDATA[ 15 <command><![CDATA[
16 gx-fastq-manipulation '$input_file' '$fastq_manipulation_file' '$output_file' '$output_file.files_path' '${input_file.extension[len('fastq'):]}' 16 gx-fastq-manipulation '$input_file' '$fastq_manipulation_file' '$output_file' '$output_file.files_path' '${input_file.extension[len('fastq'):]}'
17 ]]></command> 17 ]]></command>
18 <configfiles> 18 <configfiles>
19 <configfile name="fastq_manipulation_file"><![CDATA[##create an importable module 19 <configfile name="fastq_manipulation_file"><![CDATA[##create an importable module