Mercurial > repos > devteam > fastq_masker_by_quality
comparison fastq_masker_by_quality.xml @ 3:9282652e7234 draft
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/galaxy_sequence_utils/fastq_masker_by_quality commit 31edb920789fbd080260f853bc856be72fa7cfa8"
author | devteam |
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date | Fri, 01 Nov 2019 13:24:21 -0400 |
parents | eb592e9ec47a |
children | 9dfda4e310ed |
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2:eb592e9ec47a | 3:9282652e7234 |
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1 <tool id="fastq_masker_by_quality" name="FASTQ Masker" version="1.1.1"> | 1 <tool id="fastq_masker_by_quality" name="FASTQ Masker" version="1.1.1"> |
2 <description>by quality score</description> | 2 <description>by quality score</description> |
3 <requirements> | 3 <requirements> |
4 <requirement type="package" version="1.1.1">galaxy_sequence_utils</requirement> | 4 <requirement type="package" version="1.1.1">galaxy_sequence_utils</requirement> |
5 </requirements> | 5 </requirements> |
6 <edam_topics> | |
7 <edam_topic>topic_0622</edam_topic> | |
8 </edam_topics> | |
9 <edam_operations> | |
10 <edam_operation>operation_0368</edam_operation> | |
11 </edam_operations> | |
6 <command><![CDATA[ | 12 <command><![CDATA[ |
7 gx-fastq-masker-by-quality '$input_file' '$output_file' -f '${input_file.extension[len( 'fastq' ):]}' -s ${quality_score} -c ${score_comparison} | 13 gx-fastq-masker-by-quality '$input_file' '$output_file' -f '${input_file.extension[len( 'fastq' ):]}' -s ${quality_score} -c ${score_comparison} |
8 #if $mask_type.value == 'lowercase' | 14 #if $mask_type.value == 'lowercase' |
9 --lowercase | 15 --lowercase |
10 #else | 16 #else |