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comparison fastq_masker_by_quality.xml @ 5:4e1d64e6385f draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/galaxy_sequence_utils/fastq_masker_by_quality commit bb5df9e62585e12f08dfc0a9f86eec8e205b4845
author iuc
date Fri, 04 Oct 2024 10:34:49 +0000
parents 9dfda4e310ed
children
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4:9dfda4e310ed 5:4e1d64e6385f
1 <tool id="fastq_masker_by_quality" name="FASTQ Masker" version="@TOOL_VERSION@"> 1 <tool id="fastq_masker_by_quality" name="FASTQ Masker" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
2 <description>by quality score</description> 2 <description>by quality score</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"/>
7 <edam_topics> 6 <edam_topics>
8 <edam_topic>topic_0622</edam_topic> 7 <edam_topic>topic_0622</edam_topic>
9 </edam_topics> 8 </edam_topics>
10 <edam_operations> 9 <edam_operations>
11 <edam_operation>operation_0368</edam_operation> 10 <edam_operation>operation_0368</edam_operation>
12 </edam_operations> 11 </edam_operations>
12 <expand macro="requirements"/>
13 <command><![CDATA[ 13 <command><![CDATA[
14 gx-fastq-masker-by-quality '$input_file' '$output_file' -f '${input_file.extension[len('fastq'):]}' -s ${quality_score} -c ${score_comparison} 14 gx-fastq-masker-by-quality '$input_file' '$output_file' -f '${input_file.extension[len('fastq'):]}' -s ${quality_score} -c ${score_comparison}
15 #if $mask_type == 'lowercase' 15 #if $mask_type == 'lowercase'
16 --lowercase 16 --lowercase
17 #else 17 #else