changeset 4:9dfda4e310ed draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/galaxy_sequence_utils/fastq_masker_by_quality commit d4ced60a941c4c4a2fe95de9c09a10086810b387"
author iuc
date Wed, 19 Feb 2020 12:32:01 -0500
parents 9282652e7234
children 4e1d64e6385f
files fastq_masker_by_quality.xml macros.xml
diffstat 2 files changed, 16 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/fastq_masker_by_quality.xml	Fri Nov 01 13:24:21 2019 -0400
+++ b/fastq_masker_by_quality.xml	Wed Feb 19 12:32:01 2020 -0500
@@ -1,8 +1,9 @@
-<tool id="fastq_masker_by_quality" name="FASTQ Masker" version="1.1.1">
+<tool id="fastq_masker_by_quality" name="FASTQ Masker" version="@TOOL_VERSION@">
     <description>by quality score</description>
-    <requirements>
-        <requirement type="package" version="1.1.1">galaxy_sequence_utils</requirement>
-    </requirements>
+    <macros>
+        <import>macros.xml</import>
+    </macros>
+    <expand macro="requirements"/>
     <edam_topics>
         <edam_topic>topic_0622</edam_topic>
     </edam_topics>
@@ -10,8 +11,8 @@
         <edam_operation>operation_0368</edam_operation>
     </edam_operations>
     <command><![CDATA[
-gx-fastq-masker-by-quality '$input_file' '$output_file' -f '${input_file.extension[len( 'fastq' ):]}' -s ${quality_score} -c ${score_comparison}
-#if $mask_type.value == 'lowercase'
+gx-fastq-masker-by-quality '$input_file' '$output_file' -f '${input_file.extension[len('fastq'):]}' -s ${quality_score} -c ${score_comparison}
+#if $mask_type == 'lowercase'
     --lowercase
 #else
     -m ${mask_type}
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Wed Feb 19 12:32:01 2020 -0500
@@ -0,0 +1,9 @@
+<macros>
+    <token name="@TOOL_VERSION@">1.1.5</token>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">galaxy_sequence_utils</requirement>
+            <yield/>
+        </requirements>
+    </xml>>
+</macros>