Mercurial > repos > devteam > fastq_paired_end_joiner

comparison fastq_paired_end_joiner.xml @ 6:09a2199cd356 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/galaxy_sequence_utils/fastq_paired_end_joiner commit 31edb920789fbd080260f853bc856be72fa7cfa8"
author devteam
date Fri, 01 Nov 2019 13:25:12 -0400
parents 822cc1e6274e
children c885369b207b
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5:822cc1e6274e 6:09a2199cd356
1 <tool id="fastq_paired_end_joiner" name="FASTQ joiner" version="2.0.1.1"> 1 <tool id="fastq_paired_end_joiner" name="FASTQ joiner" version="2.0.1.1">
2 <description>on paired end reads</description> 2 <description>on paired end reads</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.1.2">galaxy_sequence_utils</requirement> 4 <requirement type="package" version="1.1.2">galaxy_sequence_utils</requirement>
5 </requirements> 5 </requirements>
6 <edam_topics>
7 <edam_topic>topic_0622</edam_topic>
8 </edam_topics>
9 <edam_operations>
10 <edam_operation>operation_3436</edam_operation>
11 </edam_operations>
6 <command><![CDATA[ 12 <command><![CDATA[
7 gx-fastq-paired-end-joiner '$input1_file' '${input1_file.extension[len('fastq'):]}' '$input2_file' '${input2_file.extension[len('fastq'):]}' '$output_file' $style '${paste_sequence}' 13 gx-fastq-paired-end-joiner '$input1_file' '${input1_file.extension[len('fastq'):]}' '$input2_file' '${input2_file.extension[len('fastq'):]}' '$output_file' $style '${paste_sequence}'
8 ]]></command> 14 ]]></command>
9 <inputs> 15 <inputs>
10 <param name="input1_file" type="data" format="fastqsanger,fastqcssanger,fastqsanger.gz,fastqcssanger.gz,fastqsanger.bz2,fastqcssanger.bz2" label="Left-hand Reads" /> 16 <param name="input1_file" type="data" format="fastqsanger,fastqcssanger,fastqsanger.gz,fastqcssanger.gz,fastqsanger.bz2,fastqcssanger.bz2" label="Left-hand Reads" />