diff fastq_paired_end_joiner.xml @ 5:822cc1e6274e draft

planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/galaxy_sequence_utils/fastq_paired_end_joiner commit 28c441e8aa66a55d276b0f6325d34086eb715872
author devteam
date Sat, 07 Oct 2017 09:58:53 -0400
parents 080a058abf1e
children 09a2199cd356
line wrap: on
line diff
--- a/fastq_paired_end_joiner.xml	Sat Sep 30 14:59:13 2017 -0400
+++ b/fastq_paired_end_joiner.xml	Sat Oct 07 09:58:53 2017 -0400
@@ -1,7 +1,7 @@
-<tool id="fastq_paired_end_joiner" name="FASTQ joiner" version="2.0.1.0">
+<tool id="fastq_paired_end_joiner" name="FASTQ joiner" version="2.0.1.1">
     <description>on paired end reads</description>
     <requirements>
-        <requirement type="package" version="1.1.1">galaxy_sequence_utils</requirement>
+        <requirement type="package" version="1.1.2">galaxy_sequence_utils</requirement>
     </requirements>
     <command><![CDATA[
 gx-fastq-paired-end-joiner '$input1_file' '${input1_file.extension[len('fastq'):]}' '$input2_file' '${input2_file.extension[len('fastq'):]}' '$output_file' $style '${paste_sequence}'
@@ -24,6 +24,16 @@
             <param name="input2_file" value="split_pair_reads_2.fastqsanger" ftype="fastqsanger" />
             <output name="output_file" file="3.fastqsanger" ftype="fastqsanger" />
         </test>
+        <test>
+            <param name="input1_file" value="split_pair_reads_1.fastqsanger.gz" ftype="fastqsanger.gz" />
+            <param name="input2_file" value="split_pair_reads_2.fastqsanger.gz" ftype="fastqsanger.gz" />
+            <output name="output_file" file="3.fastqsanger" ftype="fastqsanger.gz" decompress="true" />
+        </test>
+        <test>
+            <param name="input1_file" value="split_pair_reads_1.fastqsanger.bz2" ftype="fastqsanger.bz2" />
+            <param name="input2_file" value="split_pair_reads_2.fastqsanger.bz2" ftype="fastqsanger.bz2" />
+            <output name="output_file" file="3.fastqsanger" ftype="fastqsanger.bz2" decompress="true" />
+        </test>
     </tests>
     <help><![CDATA[
 **What it does**