Mercurial > repos > devteam > fastq_paired_end_joiner
changeset 5:822cc1e6274e draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/galaxy_sequence_utils/fastq_paired_end_joiner commit 28c441e8aa66a55d276b0f6325d34086eb715872
| author | devteam |
|---|---|
| date | Sat, 07 Oct 2017 09:58:53 -0400 |
| parents | 080a058abf1e |
| children | 09a2199cd356 |
| files | fastq_paired_end_joiner.xml test-data/split_pair_reads_1.fastqsanger.bz2 test-data/split_pair_reads_1.fastqsanger.gz test-data/split_pair_reads_2.fastqsanger.bz2 test-data/split_pair_reads_2.fastqsanger.gz |
| diffstat | 5 files changed, 12 insertions(+), 2 deletions(-) [+] |
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--- a/fastq_paired_end_joiner.xml Sat Sep 30 14:59:13 2017 -0400 +++ b/fastq_paired_end_joiner.xml Sat Oct 07 09:58:53 2017 -0400 @@ -1,7 +1,7 @@ -<tool id="fastq_paired_end_joiner" name="FASTQ joiner" version="2.0.1.0"> +<tool id="fastq_paired_end_joiner" name="FASTQ joiner" version="2.0.1.1"> <description>on paired end reads</description> <requirements> - <requirement type="package" version="1.1.1">galaxy_sequence_utils</requirement> + <requirement type="package" version="1.1.2">galaxy_sequence_utils</requirement> </requirements> <command><![CDATA[ gx-fastq-paired-end-joiner '$input1_file' '${input1_file.extension[len('fastq'):]}' '$input2_file' '${input2_file.extension[len('fastq'):]}' '$output_file' $style '${paste_sequence}' @@ -24,6 +24,16 @@ <param name="input2_file" value="split_pair_reads_2.fastqsanger" ftype="fastqsanger" /> <output name="output_file" file="3.fastqsanger" ftype="fastqsanger" /> </test> + <test> + <param name="input1_file" value="split_pair_reads_1.fastqsanger.gz" ftype="fastqsanger.gz" /> + <param name="input2_file" value="split_pair_reads_2.fastqsanger.gz" ftype="fastqsanger.gz" /> + <output name="output_file" file="3.fastqsanger" ftype="fastqsanger.gz" decompress="true" /> + </test> + <test> + <param name="input1_file" value="split_pair_reads_1.fastqsanger.bz2" ftype="fastqsanger.bz2" /> + <param name="input2_file" value="split_pair_reads_2.fastqsanger.bz2" ftype="fastqsanger.bz2" /> + <output name="output_file" file="3.fastqsanger" ftype="fastqsanger.bz2" decompress="true" /> + </test> </tests> <help><![CDATA[ **What it does**