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comparison fastq_stats.xml @ 1:daaf552153fe draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/galaxy_sequence_utils/fastq_stats commit a1517c9d22029095120643bbe2c8fa53754dd2b7
author devteam
date Wed, 11 Nov 2015 12:42:31 -0500
parents 9b7b4e0ca9db
children e2cf940128d5
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0:9b7b4e0ca9db 1:daaf552153fe
15 <param name="input_file" value="fastq_stats1.fastq" ftype="fastqsanger" /> 15 <param name="input_file" value="fastq_stats1.fastq" ftype="fastqsanger" />
16 <output name="output_file" file="fastq_stats_1_out.tabular" /> 16 <output name="output_file" file="fastq_stats_1_out.tabular" />
17 </test> 17 </test>
18 </tests> 18 </tests>
19 <help> 19 <help>
20 **What is does**
21
20 This tool creates summary statistics on a FASTQ file. 22 This tool creates summary statistics on a FASTQ file.
21 23
22 .. class:: infomark 24 .. class:: infomark
23 25
24 **TIP:** This statistics report can be used as input for the **Boxplot** tools. 26 **TIP:** This statistics report can be used as input for the **Boxplot** tools.
63 65
64 Adapter bases in color space reads are excluded from statistics. 66 Adapter bases in color space reads are excluded from statistics.
65 67
66 ------ 68 ------
67 69
68 **Citation**
69
70 If you use this tool, please cite `Blankenberg D, Gordon A, Von Kuster G, Coraor N, Taylor J, Nekrutenko A; Galaxy Team. Manipulation of FASTQ data with Galaxy. Bioinformatics. 2010 Jul 15;26(14):1783-5. &lt;http://www.ncbi.nlm.nih.gov/pubmed/20562416&gt;`_
71
72
73 </help> 70 </help>
71
72 <citations>
73 <citation type="doi">10.1093/bioinformatics/btq281</citation>
74 </citations>
75
74 </tool> 76 </tool>