Mercurial > repos > devteam > fastq_to_fasta
comparison fastq_to_fasta.xml @ 3:02a5f43cd5d1 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/fastx_toolkit/fastq_to_fasta commit 3953b65f6b1c0336e9cadbe0792a5d3b14b5643a
author | iuc |
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date | Wed, 22 Aug 2018 11:04:47 -0400 |
parents | ce309f4ff17f |
children | e282bc27be9a |
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2:ce309f4ff17f | 3:02a5f43cd5d1 |
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1 <tool id="cshl_fastq_to_fasta" name="FASTQ to FASTA" version="1.0.1"> | 1 <tool id="cshl_fastq_to_fasta" name="FASTQ to FASTA" version="1.0.2"> |
2 <description>converter from FASTX-toolkit</description> | 2 <description>converter from FASTX-toolkit</description> |
3 <macros> | 3 <macros> |
4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
5 </macros> | 5 </macros> |
6 <expand macro="requirements" /> | 6 <expand macro="requirements" /> |
8 @CATS@ fastq_to_fasta | 8 @CATS@ fastq_to_fasta |
9 $SKIPN | 9 $SKIPN |
10 $RENAMESEQ | 10 $RENAMESEQ |
11 -o '$output' | 11 -o '$output' |
12 -v @FQQUAL@ | 12 -v @FQQUAL@ |
13 @GZIP@ | |
13 ]]></command> | 14 ]]></command> |
14 <inputs> | 15 <inputs> |
15 <expand macro="fastq_input" /> | 16 <expand macro="fastq_input" /> |
16 <param name="SKIPN" type="select" label="Discard sequences with unknown (N) bases "> | 17 <param name="SKIPN" type="select" label="Discard sequences with unknown (N) bases "> |
17 <option value="">yes</option> | 18 <option value="">yes</option> |