Mercurial > repos > devteam > fastq_to_fasta

comparison fastq_to_fasta.xml @ 3:02a5f43cd5d1 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/fastx_toolkit/fastq_to_fasta commit 3953b65f6b1c0336e9cadbe0792a5d3b14b5643a
author iuc
date Wed, 22 Aug 2018 11:04:47 -0400
parents ce309f4ff17f
children e282bc27be9a
comparison
equal deleted inserted replaced
2:ce309f4ff17f 3:02a5f43cd5d1
1 <tool id="cshl_fastq_to_fasta" name="FASTQ to FASTA" version="1.0.1"> 1 <tool id="cshl_fastq_to_fasta" name="FASTQ to FASTA" version="1.0.2">
2 <description>converter from FASTX-toolkit</description> 2 <description>converter from FASTX-toolkit</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
8 @CATS@ fastq_to_fasta 8 @CATS@ fastq_to_fasta
9 $SKIPN 9 $SKIPN
10 $RENAMESEQ 10 $RENAMESEQ
11 -o '$output' 11 -o '$output'
12 -v @FQQUAL@ 12 -v @FQQUAL@
13 @GZIP@
13 ]]></command> 14 ]]></command>
14 <inputs> 15 <inputs>
15 <expand macro="fastq_input" /> 16 <expand macro="fastq_input" />
16 <param name="SKIPN" type="select" label="Discard sequences with unknown (N) bases "> 17 <param name="SKIPN" type="select" label="Discard sequences with unknown (N) bases ">
17 <option value="">yes</option> 18 <option value="">yes</option>