# HG changeset patch # User devteam # Date 1447263488 18000 # Node ID 186b8d913e6c3f9f973e1fa6ba07089214c0dd2f # Parent 04614cf6ed399f2af2e27fe0e5d65d1f4117be00 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/fastx_toolkit/fastq_to_fasta commit a1517c9d22029095120643bbe2c8fa53754dd2b7 diff -r 04614cf6ed39 -r 186b8d913e6c fastq_to_fasta.xml --- a/fastq_to_fasta.xml Wed Sep 25 11:04:26 2013 -0400 +++ b/fastq_to_fasta.xml Wed Nov 11 12:38:08 2015 -0500 @@ -1,9 +1,9 @@ - + converter fastx_toolkit - gunzip -cf $input | fastq_to_fasta $SKIPN $RENAMESEQ -o $output -v + gunzip -cf $input | fastq_to_fasta $SKIPN $RENAMESEQ -o $output -v #if $input.ext == "fastqsanger": -Q 33 #end if @@ -61,22 +61,22 @@ GGTCAATGATGAGTTGGCACTGTAGGCACCATCAAT +CSHL_4_FC042GAMMII_2_1_517_596 40 40 40 40 40 40 40 40 40 40 38 40 40 40 40 40 14 40 40 40 40 40 36 40 13 14 24 24 9 24 9 40 10 10 15 40 - + Will be converted to FASTA (with 'rename sequence names' = NO):: >CSHL_4_FC042GAMMII_2_1_517_596 GGTCAATGATGAGTTGGCACTGTAGGCACCATCAAT - + Will be converted to FASTA (with 'rename sequence names' = YES):: >1 GGTCAATGATGAGTTGGCACTGTAGGCACCATCAAT - + ------ This tool is based on `FASTX-toolkit`__ by Assaf Gordon. - .. __: http://hannonlab.cshl.edu/fastx_toolkit/ + .. __: http://hannonlab.cshl.edu/fastx_toolkit/ diff -r 04614cf6ed39 -r 186b8d913e6c tool_dependencies.xml --- a/tool_dependencies.xml Wed Sep 25 11:04:26 2013 -0400 +++ b/tool_dependencies.xml Wed Nov 11 12:38:08 2015 -0500 @@ -1,6 +1,6 @@ - +