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comparison fastq_to_tabular.xml @ 5:43807a65369f draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/galaxy_sequence_utils/fastq_to_tabular commit bb5df9e62585e12f08dfc0a9f86eec8e205b4845
author iuc
date Fri, 04 Oct 2024 10:35:23 +0000
parents 4b347702c4aa
children
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4:4b347702c4aa 5:43807a65369f
1 <tool id="fastq_to_tabular" name="FASTQ to Tabular" version="@TOOL_VERSION@"> 1 <tool id="fastq_to_tabular" name="FASTQ to Tabular" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
2 <description>converter</description> 2 <description>converter</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"/>
7 <edam_topics> 6 <edam_topics>
8 <edam_topic>topic_0622</edam_topic> 7 <edam_topic>topic_0622</edam_topic>
9 </edam_topics> 8 </edam_topics>
10 <edam_operations> 9 <edam_operations>
11 <edam_operation>operation_0233</edam_operation> 10 <edam_operation>operation_0233</edam_operation>
12 </edam_operations> 11 </edam_operations>
12 <expand macro="requirements"/>
13 <command><![CDATA[ 13 <command><![CDATA[
14 gx-fastq-to-tabular '$input_file' '$output_file' $descr_columns '${input_file.extension[len('fastq'):]}' 14 gx-fastq-to-tabular '$input_file' '$output_file' $descr_columns '${input_file.extension[len('fastq'):]}'
15 ]]></command> 15 ]]></command>
16 <inputs> 16 <inputs>
17 <param name="input_file" type="data" format="fastqsanger,fastqcssanger,fastqillumina,fastqsolexa,fastqsanger.gz,fastqcssanger.gz,fastqillumina.gz,fastqsolexa.gz,fastqsanger.bz2,fastqcssanger.bz2,fastqillumina.bz2,fastqsolexa.bz2" label="FASTQ file to convert" /> 17 <param name="input_file" type="data" format="fastqsanger,fastqcssanger,fastqillumina,fastqsolexa,fastqsanger.gz,fastqcssanger.gz,fastqillumina.gz,fastqsolexa.gz,fastqsanger.bz2,fastqcssanger.bz2,fastqillumina.bz2,fastqsolexa.bz2" label="FASTQ file to convert" />