Mercurial > repos > devteam > fastq_to_tabular
diff fastq_to_tabular.xml @ 3:614a63f14adf draft
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/galaxy_sequence_utils/fastq_to_tabular commit 31edb920789fbd080260f853bc856be72fa7cfa8"
| author | devteam |
|---|---|
| date | Fri, 01 Nov 2019 13:26:18 -0400 |
| parents | ccf4e1d1fcbe |
| children | 4b347702c4aa |
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--- a/fastq_to_tabular.xml Sat Sep 30 13:55:43 2017 -0400 +++ b/fastq_to_tabular.xml Fri Nov 01 13:26:18 2019 -0400 @@ -3,6 +3,12 @@ <requirements> <requirement type="package" version="1.1.1">galaxy_sequence_utils</requirement> </requirements> + <edam_topics> + <edam_topic>topic_0622</edam_topic> + </edam_topics> + <edam_operations> + <edam_operation>operation_0233</edam_operation> + </edam_operations> <command><![CDATA[ gx-fastq-to-tabular '$input_file' '$output_file' $descr_columns '${input_file.extension[len('fastq'):]}' ]]></command> @@ -62,10 +68,10 @@ ttatttattccacaagcaggtttaaattttaaatttaaattattgcagaagactttaaattaacctcgttgtcggagtca tttgttcggttattggtcgaaagtaaccncgggaagtgccgaaaactaacaaacaaaagaagatagtgaaattttaatta aaanaaatagccaaacgtaactaactaaaacggacccgtcgaggaactgccaacggacgacacagggagtagnnn - +FSRRS4401BE7HA [length=395] [gc=36.46] [flows=800] [phred_min=0] [phred_max=40] [trimmed_length=95] + +FSRRS4401BE7HA [length=395] [gc=36.46] [flows=800] [phred_min=0] [phred_max=40] [trimmed_length=95] FFFDDDDDDDA666?688FFHGGIIIIIIIIIIIIIIIIIIHHHIIIIIIIIIGHGFFFFF====DFFFFFFFFFFFFFF D???:3104/76=:5...4.3,,,366////4<ABBAAA=CCFDDDDDDDD:666CDFFFF=<ABA=;:333111<===9 - 9;B889FFFFFFDDBDBDDD=8844231..,,,-,,,,,,,,1133..---17111,,,,,22555131121.--.,333 + 9;B889FFFFFFDDBDBDDD=8844231..,,,-,,,,,,,,1133..---17111,,,,,22555131121.--.,333 11,.,,3--,,.,,--,3511123..--!,,,,--,----9,,,,8=,,-,,,-,,,,---26:9:5-..1,,,,11//, ,,,!,,1917--,,,,-3.,--,,17,,,,---+11113.030000,,,044400036;96662.//;7><;!!! @FSRRS4401BRRTC [length=145] [gc=38.62] [flows=800] [phred_min=0] [phred_max=38] [trimmed_length=74]