Mercurial > repos > devteam > fastq_to_tabular

diff fastq_to_tabular.xml @ 1:7da7ddea4425 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/galaxy_sequence_utils/fastq_to_tabular commit a1517c9d22029095120643bbe2c8fa53754dd2b7
author devteam
date Wed, 11 Nov 2015 12:42:45 -0500
parents bc9269529e88
children ccf4e1d1fcbe
line wrap: on
line diff
--- a/fastq_to_tabular.xml	Mon Jan 27 09:28:21 2014 -0500
+++ b/fastq_to_tabular.xml	Wed Nov 11 12:42:45 2015 -0500
@@ -6,7 +6,7 @@
   <command interpreter="python">fastq_to_tabular.py '$input_file' '$output_file' $descr_columns '${input_file.extension[len( 'fastq' ):]}'</command>
   <inputs>
     <param name="input_file" type="data" format="fastqsanger,fastqcssanger,fastqillumina,fastqsolexa" label="FASTQ file to convert" />
-    <param name="descr_columns" type="integer" size="2" value="1" label="How many columns to divide title string into?" help="Typically 2 to take the ID (first word) and decription (rest) as two columns, or 1 to give a single column">
+    <param name="descr_columns" type="integer" value="1" label="How many columns to divide title string into?" help="Typically 2 to take the ID (first word) and decription (rest) as two columns, or 1 to give a single column">
       <validator type="in_range" min="1" />
     </param>
   </inputs>
@@ -95,10 +95,10 @@
 
 ------
 
-**Citation**
-
-If you use this tool, please cite `Blankenberg D, Gordon A, Von Kuster G, Coraor N, Taylor J, Nekrutenko A; Galaxy Team. Manipulation of FASTQ data with Galaxy. Bioinformatics. 2010 Jul 15;26(14):1783-5. &lt;http://www.ncbi.nlm.nih.gov/pubmed/20562416&gt;`_
-
-
   </help>
+  
+  <citations>
+    <citation type="doi">10.1093/bioinformatics/btq281</citation>
+  </citations>
+  
 </tool>