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comparison fastq_trimmer.xml @ 6:f0b18efb97f1 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/galaxy_sequence_utils/fastq_trimmer commit bb5df9e62585e12f08dfc0a9f86eec8e205b4845
author iuc
date Fri, 04 Oct 2024 10:35:28 +0000
parents b63b2bfb3ea3
children
comparison
equal deleted inserted replaced
5:b63b2bfb3ea3 6:f0b18efb97f1
1 <tool id="fastq_trimmer" name="FASTQ Trimmer" version="@TOOL_VERSION@"> 1 <tool id="fastq_trimmer" name="FASTQ Trimmer" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
2 <description>by column</description> 2 <description>by column</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"/>
7 <edam_topics> 6 <edam_topics>
8 <edam_topic>topic_0622</edam_topic> 7 <edam_topic>topic_0622</edam_topic>
9 </edam_topics> 8 </edam_topics>
10 <edam_operations> 9 <edam_operations>
11 <edam_operation>operation_3192</edam_operation> 10 <edam_operation>operation_3192</edam_operation>
12 </edam_operations> 11 </edam_operations>
12 <expand macro="requirements"/>
13 <command><![CDATA[ 13 <command><![CDATA[
14 gx-fastq-trimmer '$input_file' '$output_file' ${offset_type.left_column_offset} ${offset_type.right_column_offset} ${offset_type.base_offset_type} '${input_file.extension[len('fastq'):]}' $keep_zero_length 14 gx-fastq-trimmer '$input_file' '$output_file' ${offset_type.left_column_offset} ${offset_type.right_column_offset} ${offset_type.base_offset_type} '${input_file.extension[len('fastq'):]}' $keep_zero_length
15 ]]></command> 15 ]]></command>
16 <inputs> 16 <inputs>
17 <param name="input_file" type="data" format="fastqsanger,fastqcssanger,fastqsanger.gz,fastqcssanger.gz,fastqsanger.bz2,fastqcssanger.bz2" label="FASTQ file"/> 17 <param name="input_file" type="data" format="fastqsanger,fastqcssanger,fastqsanger.gz,fastqcssanger.gz,fastqsanger.bz2,fastqcssanger.bz2" label="FASTQ file"/>