Mercurial > repos > devteam > fastq_trimmer
changeset 5:b63b2bfb3ea3 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/galaxy_sequence_utils/fastq_trimmer commit d4ced60a941c4c4a2fe95de9c09a10086810b387"
| author | iuc |
|---|---|
| date | Wed, 19 Feb 2020 12:35:44 -0500 |
| parents | 33794bdb7fe0 |
| children | f0b18efb97f1 |
| files | fastq_trimmer.xml macros.xml |
| diffstat | 2 files changed, 15 insertions(+), 5 deletions(-) [+] |
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--- a/fastq_trimmer.xml Fri Nov 01 13:26:50 2019 -0400 +++ b/fastq_trimmer.xml Wed Feb 19 12:35:44 2020 -0500 @@ -1,8 +1,9 @@ -<tool id="fastq_trimmer" name="FASTQ Trimmer" version="1.1.1"> +<tool id="fastq_trimmer" name="FASTQ Trimmer" version="@TOOL_VERSION@"> <description>by column</description> - <requirements> - <requirement type="package" version="1.1.1">galaxy_sequence_utils</requirement> - </requirements> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements"/> <edam_topics> <edam_topic>topic_0622</edam_topic> </edam_topics> @@ -10,7 +11,7 @@ <edam_operation>operation_3192</edam_operation> </edam_operations> <command><![CDATA[ -gx-fastq-trimmer '$input_file' '$output_file' ${offset_type['left_column_offset']} ${offset_type['right_column_offset']} ${offset_type['base_offset_type']} '${input_file.extension[len('fastq'):]}' $keep_zero_length +gx-fastq-trimmer '$input_file' '$output_file' ${offset_type.left_column_offset} ${offset_type.right_column_offset} ${offset_type.base_offset_type} '${input_file.extension[len('fastq'):]}' $keep_zero_length ]]></command> <inputs> <param name="input_file" type="data" format="fastqsanger,fastqcssanger,fastqsanger.gz,fastqcssanger.gz,fastqsanger.bz2,fastqcssanger.bz2" label="FASTQ file"/>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Wed Feb 19 12:35:44 2020 -0500 @@ -0,0 +1,9 @@ +<macros> + <token name="@TOOL_VERSION@">1.1.5</token> + <xml name="requirements"> + <requirements> + <requirement type="package" version="@TOOL_VERSION@">galaxy_sequence_utils</requirement> + <yield/> + </requirements> + </xml>> +</macros>