annotate test-data/fastqc_data.txt @ 3:0b201de108b9 draft

Uploaded
author devteam
date Fri, 12 Dec 2014 10:55:57 -0500
parents 8fae48caaf06
children 3fdc1a74d866
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1 ##FastQC 0.11.2
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2 >>Basic Statistics pass
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3 #Measure Value
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4 Filename 1000gsample.fastq
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5 File type Conventional base calls
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6 Encoding Sanger / Illumina 1.9
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7 Total Sequences 5000
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8 Sequences flagged as poor quality 0
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9 Sequence length 54
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10 %GC 43
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11 >>END_MODULE
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12 >>Per base sequence quality warn
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13 #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile
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14 1 28.9946 31.0 27.0 33.0 22.0 34.0
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15 2 28.486 30.0 26.0 32.0 21.0 33.0
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16 3 28.5272 30.0 26.0 32.0 21.0 34.0
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17 4 28.6252 30.0 26.0 32.0 22.0 33.0
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18 5 28.4804 30.0 26.0 32.0 21.0 33.0
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19 6 28.5128 30.0 26.0 32.0 22.0 33.0
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20 7 28.4102 30.0 26.0 32.0 21.0 33.0
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21 8 28.4674 30.0 26.0 32.0 22.0 33.0
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22 9 28.182 30.0 26.0 32.0 21.0 33.0
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23 10 28.0908 30.0 26.0 32.0 21.0 33.0
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24 11 28.1876 30.0 26.0 32.0 21.0 33.0
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25 12 28.1742 30.0 26.0 32.0 21.0 33.0
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26 13 27.923 30.0 25.0 32.0 20.0 33.0
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27 14 27.8984 29.0 25.0 32.0 21.0 33.0
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28 15 27.6112 29.0 25.0 32.0 20.0 33.0
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29 16 27.6638 29.0 25.0 32.0 20.0 33.0
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30 17 27.5734 29.0 25.0 32.0 20.0 33.0
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31 18 27.6348 29.0 25.0 32.0 20.0 33.0
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32 19 27.6526 29.0 25.0 32.0 20.0 33.0
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33 20 27.2716 29.0 24.0 32.0 19.0 33.0
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34 21 27.2642 29.0 25.0 31.0 19.0 33.0
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35 22 26.881 28.0 24.0 31.0 19.0 33.0
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36 23 26.8124 28.0 24.0 31.0 19.0 33.0
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37 24 26.8204 28.0 24.0 31.0 19.0 33.0
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38 25 26.6606 28.0 24.0 31.0 18.0 33.0
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39 26 26.3806 28.0 23.0 31.0 18.0 33.0
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40 27 25.947 28.0 23.0 31.0 17.0 33.0
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41 28 25.7446 27.0 22.0 31.0 16.0 33.0
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42 29 25.6856 27.0 22.0 31.0 16.0 33.0
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43 30 25.5228 27.0 22.0 31.0 16.0 33.0
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44 31 25.354 27.0 22.0 30.0 16.0 32.0
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45 32 25.1656 27.0 22.0 30.0 16.0 32.0
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46 33 25.0164 26.0 21.0 30.0 15.0 32.0
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47 34 24.75 26.0 21.0 30.0 15.0 32.0
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48 35 24.3926 26.0 21.0 30.0 15.0 32.0
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51 38 23.7544 25.0 20.0 29.0 13.0 32.0
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52 39 23.485 25.0 19.0 29.0 13.0 32.0
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53 40 23.1984 24.0 19.0 29.0 13.0 32.0
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54 41 23.0976 24.0 19.0 29.0 13.0 32.0
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55 42 22.9212 24.0 19.0 28.0 13.0 31.0
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56 43 22.5172 24.0 18.0 28.0 12.0 31.0
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57 44 22.3234 23.0 18.0 28.0 12.0 31.0
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58 45 22.1372 23.0 18.0 28.0 11.0 31.0
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59 46 22.2166 23.0 18.0 28.0 11.0 31.0
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60 47 22.075 23.0 18.0 28.0 11.0 31.0
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61 48 21.4592 22.0 17.0 27.0 11.0 31.0
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62 49 21.0954 22.0 16.0 27.0 10.0 30.0
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63 50 20.9356 22.0 16.0 27.0 10.0 30.0
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64 51 20.6152 21.0 15.0 27.0 9.0 30.0
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65 52 20.6588 21.0 16.0 27.0 9.0 30.0
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66 53 19.5852 20.0 14.0 25.0 9.0 29.0
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67 54 19.9424 21.0 14.0 26.0 7.0 30.0
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68 >>END_MODULE
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69 >>Per tile sequence quality pass
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70 #Tile Base Mean
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71 1 1 0.4542485249902164
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72 1 2 0.02493171505959424
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73 1 3 0.004493134032774293
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74 1 4 0.6119404948560927
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75 1 5 0.5283275008594686
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76 1 6 0.3741933003058371
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77 1 7 -0.2985554485298749
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78 1 8 0.6040181642739206
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79 1 9 0.43795745033596845
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80 1 10 0.05327706110314523
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81 1 11 0.8097461135057031
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82 1 12 0.9171964750225641
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83 1 13 1.0716973449965757
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84 1 14 0.562649938864773
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85 1 15 0.5112535943737946
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86 1 16 0.7098461441939676
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88 1 18 0.2351551176870892
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89 1 19 0.002716666680861124
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90 1 20 -0.5270840838615776
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91 1 21 0.08959510509382795
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92 1 22 -0.6322238602545553
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93 1 23 -0.8566085860715056
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94 1 24 -0.8167218970288026
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95 1 25 0.7728199138173544
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97 1 27 -0.7734079986509634
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98 1 28 0.46313879073469266
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99 1 29 -1.0803714983510417
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100 1 30 -0.9107347156963463
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101 1 31 -1.1279249650605188
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102 1 32 0.03588141895047414
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103 1 33 -0.3276409211703317
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119 1 49 -1.345180096970381
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120 1 50 -1.3012642855865373
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121 1 51 -1.6748103331735038
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diff changeset
582 10 26 1.2592163562496026
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
583 10 27 2.2112073859644212
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
584 10 28 1.7964721240680284
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
585 10 29 0.7632182452387006
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
586 10 30 1.604649899688269
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
587 10 31 1.8797673426317907
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
588 10 32 0.47690705997611715
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
589 10 33 -0.15584604937545876
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
590 10 34 1.8398773633300465
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
591 10 35 2.981199715317363
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
592 10 36 0.8110078355858406
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
593 10 37 1.8617452936378776
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
594 10 38 1.7742605987363014
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
595 10 39 3.2937897396720928
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
596 10 40 3.2918952034041524
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
597 10 41 1.3115749098869323
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
598 10 42 2.911702897841007
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
599 10 43 2.9292302270051636
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
600 10 44 1.964400342482186
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
601 10 45 0.5477757053971892
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
602 10 46 1.9135298205630704
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
603 10 47 1.2741568491184836
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
604 10 48 2.799334226444202
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
605 10 49 3.441999390209105
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
606 10 50 4.391043406721156
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
607 10 51 3.7815999232367545
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
608 10 52 1.3217607371315836
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
609 10 53 3.0125314696670173
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
610 10 54 2.2316249763308633
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
611 >>END_MODULE
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
612 >>Per sequence quality scores warn
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
613 #Quality Count
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
614 8 4.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
615 9 4.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
616 10 2.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
617 11 2.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
618 12 4.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
619 13 6.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
620 14 4.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
621 15 11.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
622 16 20.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
623 17 50.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
624 18 98.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
625 19 149.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
626 20 210.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
627 21 275.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
628 22 367.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
629 23 425.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
630 24 518.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
631 25 540.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
632 26 539.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
633 27 532.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
634 28 468.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
635 29 360.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
636 30 234.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
637 31 122.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
638 32 51.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
639 33 5.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
640 >>END_MODULE
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
641 >>Per base sequence content warn
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
642 #Base G A T C
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
643 1 21.5 32.64 25.919999999999998 19.939999999999998
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
644 2 24.04 31.72 26.540000000000003 17.7
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
645 3 21.58 28.860000000000003 29.42 20.14
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
646 4 21.58 28.28 28.9 21.240000000000002
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
647 5 21.16 29.720000000000002 28.32 20.8
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
648 6 22.38 29.24 25.72 22.66
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
649 7 21.34 30.320000000000004 28.24 20.1
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
650 8 21.58 29.060000000000002 27.939999999999998 21.42
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
651 9 20.3 28.48 28.58 22.64
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
652 10 21.2 30.84 26.56 21.4
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
653 11 21.14 28.64 27.279999999999998 22.939999999999998
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
654 12 21.32 28.88 28.999999999999996 20.8
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
655 13 20.36 29.220000000000002 28.939999999999998 21.48
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
656 14 20.02 29.2 29.220000000000002 21.560000000000002
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
657 15 20.200000000000003 29.220000000000002 28.38 22.2
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
658 16 20.34 29.38 29.299999999999997 20.979999999999997
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
659 17 20.599999999999998 29.14 28.499999999999996 21.759999999999998
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
660 18 20.599999999999998 27.92 29.4 22.08
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
661 19 21.66 28.46 28.58 21.3
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
662 20 20.0 29.24 28.96 21.8
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
663 21 21.72 28.499999999999996 28.18 21.6
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
664 22 20.52 30.880000000000003 27.3 21.3
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
665 23 20.72 28.9 29.720000000000002 20.66
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
666 24 21.12 28.62 27.58 22.68
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
667 25 21.099999999999998 29.060000000000002 29.160000000000004 20.68
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
668 26 22.18887555022009 28.391356542617046 28.131252501000397 21.288515406162464
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
669 27 21.344268853770753 28.525705141028208 28.765753150630125 21.364272854570913
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
670 28 19.34 30.54 27.46 22.66
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
671 29 20.90418083616723 29.12582516503301 29.045809161832363 20.924184836967395
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
672 30 21.099999999999998 29.4 27.439999999999998 22.06
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
673 31 20.84 28.04 28.660000000000004 22.46
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
674 32 19.847939175670266 28.371348539415763 28.7515006002401 23.02921168467387
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
675 33 22.084416883376676 28.62572514502901 27.265453090618124 22.024404880976196
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
676 34 21.304260852170433 29.285857171434287 27.265453090618124 22.144428885777156
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
677 35 21.084216843368676 29.425885177035404 28.225645129025807 21.264252850570113
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
678 36 21.404280856171233 28.665733146629325 28.805761152230446 21.124224844968996
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
679 37 20.888355342136855 29.43177270908363 28.53141256502601 21.1484593837535
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
680 38 21.864372874574915 29.02580516103221 28.065613122624526 21.044208841768352
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
681 39 21.928771508603443 28.251300520208083 27.050820328131252 22.769107643057225
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
682 40 21.32 28.499999999999996 27.82 22.36
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
683 41 21.673003802281368 28.116870122073244 27.61656994196518 22.59355613368021
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
684 42 22.29337602561537 28.036822093255953 27.71662997798679 21.953171903141886
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
685 43 21.244248849769953 28.425685137027408 27.825565113022606 22.504500900180034
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
686 44 21.404280856171233 28.985797159431886 27.545509101820365 22.064412882576516
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
687 45 21.86 29.28 26.740000000000002 22.12
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
688 46 21.26 27.54 27.74 23.46
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
689 47 21.628651460584233 28.271308523409367 28.051220488195277 22.048819527811126
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
690 48 21.279999999999998 28.439999999999998 26.400000000000002 23.880000000000003
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
691 49 21.044208841768352 29.045809161832363 27.185437087417487 22.724544908981798
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
692 50 21.82873149259704 28.15126050420168 26.810724289715886 23.209283713485394
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
693 51 21.028411364545818 27.73109243697479 28.011204481792717 23.229291716686674
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
694 52 21.824364872974595 30.146029205841167 25.94518903780756 22.084416883376676
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
695 53 21.164232846569313 28.325665133026607 28.045609121824366 22.464492898579717
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
696 54 21.53907976692787 27.024311834438418 26.90375728350412 24.5328511151296
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
697 >>END_MODULE
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
698 >>Per sequence GC content warn
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
699 #GC Content Count
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
700 0 3.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
701 1 5.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
702 2 7.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
703 3 7.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
704 4 7.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
705 5 5.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
706 6 2.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
707 7 1.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
708 8 1.5
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
709 9 2.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
710 10 1.5
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
711 11 1.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
712 12 2.5
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
713 13 4.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
714 14 4.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
715 15 4.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
716 16 5.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
717 17 6.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
718 18 11.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
719 19 19.5
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
720 20 23.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
721 21 37.5
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
722 22 52.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
723 23 61.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
724 24 70.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
725 25 79.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
726 26 88.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
727 27 117.5
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
728 28 147.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
729 29 159.5
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
730 30 172.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
731 31 203.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
732 32 243.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
733 33 252.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
734 34 290.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
735 35 328.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
736 36 330.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
737 37 332.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
738 38 332.5
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
739 39 333.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
740 40 342.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
741 41 351.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
742 42 343.5
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
743 43 336.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
744 44 318.5
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
745 45 279.5
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
746 46 258.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
747 47 254.5
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
748 48 251.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
749 49 234.5
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
750 50 218.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
751 51 209.5
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
752 52 201.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
753 53 198.5
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
754 54 196.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
755 55 177.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
756 56 162.5
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
757 57 167.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
758 58 147.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
759 59 127.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
760 60 106.5
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
761 61 86.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
762 62 85.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
763 63 84.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
764 64 61.5
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
765 65 39.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
766 66 42.5
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
767 67 46.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
768 68 34.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
769 69 17.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
770 70 12.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
771 71 14.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
772 72 16.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
773 73 12.5
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
774 74 9.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
775 75 6.5
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
776 76 4.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
777 77 4.5
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
778 78 5.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
779 79 5.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
780 80 5.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
781 81 3.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
782 82 1.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
783 83 1.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
784 84 1.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
785 85 1.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
786 86 1.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
787 87 1.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
788 88 1.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
789 89 1.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
790 90 2.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
791 91 3.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
792 92 2.5
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
793 93 2.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
794 94 2.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
795 95 3.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
796 96 4.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
797 97 5.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
798 98 6.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
799 99 3.5
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
800 100 1.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
801 >>END_MODULE
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
802 >>Per base N content pass
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
803 #Base N-Count
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
804 1 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
805 2 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
806 3 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
807 4 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
808 5 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
809 6 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
810 7 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
811 8 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
812 9 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
813 10 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
814 11 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
815 12 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
816 13 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
817 14 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
818 15 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
819 16 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
820 17 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
821 18 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
822 19 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
823 20 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
824 21 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
825 22 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
826 23 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
827 24 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
828 25 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
829 26 0.04
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
830 27 0.02
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
831 28 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
832 29 0.02
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
833 30 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
834 31 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
835 32 0.04
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
836 33 0.02
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
837 34 0.02
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
838 35 0.02
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
839 36 0.02
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
840 37 0.04
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
841 38 0.02
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
842 39 0.04
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
843 40 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
844 41 0.06
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
845 42 0.06
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
846 43 0.02
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
847 44 0.02
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
848 45 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
849 46 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
850 47 0.04
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
851 48 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
852 49 0.02
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
853 50 0.04
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
854 51 0.04
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
855 52 0.02
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
856 53 0.02
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
857 54 0.45999999999999996
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
858 >>END_MODULE
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
859 >>Sequence Length Distribution pass
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
860 #Length Count
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
861 54 5000.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
862 >>END_MODULE
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
863 >>Sequence Duplication Levels pass
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
864 #Total Deduplicated Percentage 99.52
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
865 #Duplication Level Percentage of deduplicated Percentage of total
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
866 1 99.81913183279742 99.33999999999999
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
867 2 0.08038585209003216 0.16
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
868 3 0.04019292604501608 0.12
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
869 4 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
870 5 0.02009646302250804 0.1
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
871 6 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
872 7 0.04019292604501608 0.27999999999999997
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
873 8 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
874 9 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
875 >10 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
876 >50 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
877 >100 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
878 >500 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
879 >1k 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
880 >5k 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
881 >10k+ 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
882 >>END_MODULE
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
883 >>Overrepresented sequences warn
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
884 #Sequence Count Percentage Possible Source
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
885 CGGAAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT 7 0.13999999999999999 Illumina Paired End PCR Primer 2 (96% over 33bp)
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
886 CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC 7 0.13999999999999999 Illumina Paired End PCR Primer 2 (100% over 35bp)
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
887 >>END_MODULE
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
888 >>Adapter Content pass
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
889 #Position Illumina Universal Adapter Illumina Small RNA Adapter Nextera Transposase Sequence
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
890 1 0.0 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
891 2 0.02 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
892 3 0.02 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
893 4 0.02 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
894 5 0.02 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
895 6 0.02 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
896 7 0.02 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
897 8 0.02 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
898 9 0.02 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
899 10 0.02 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
900 11 0.02 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
901 12 0.02 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
902 13 0.02 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
903 14 0.02 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
904 15 0.02 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
905 16 0.02 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
906 17 0.02 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
907 18 0.02 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
908 19 0.06 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
909 20 0.36 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
910 21 0.36 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
911 22 0.36 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
912 23 0.36 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
913 24 0.36 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
914 25 0.4 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
915 26 0.4 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
916 27 0.42 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
917 28 0.62 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
918 29 0.66 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
919 30 0.68 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
920 31 0.68 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
921 32 0.68 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
922 33 0.68 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
923 34 0.7 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
924 35 0.76 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
925 36 0.8 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
926 37 0.88 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
927 38 1.0 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
928 39 1.12 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
929 40 1.22 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
930 41 1.38 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
931 42 1.48 0.0 0.0
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
932 >>END_MODULE
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
933 >>Kmer Content pass
8fae48caaf06 Uploaded form GH
devteam
parents:
diff changeset
934 >>END_MODULE