Mercurial > repos > devteam > fastqc

comparison rgFastQC.py @ 7:3fdc1a74d866 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqc commit 0a6b68fa8ae5c04f18c4a517fc73a819f765700b
author devteam
date Mon, 11 Apr 2016 10:27:34 -0400
parents 8c650f7f76e9
children 06819360a9e2
comparison
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6:28d39af2dd06 7:3fdc1a74d866
152 opts, args = op.parse_args() 152 opts, args = op.parse_args()
153 153
154 assert opts.input != None 154 assert opts.input != None
155 assert opts.inputfilename != None 155 assert opts.inputfilename != None
156 assert opts.htmloutput != None 156 assert opts.htmloutput != None
157 assert os.path.isfile(opts.executable),'##rgFastQC.py error - cannot find executable %s' % opts.executable
158 if not os.path.exists(opts.outputdir): 157 if not os.path.exists(opts.outputdir):
159 os.makedirs(opts.outputdir) 158 os.makedirs(opts.outputdir)
160 159
161 fastqc_runner = FastQCRunner(opts) 160 fastqc_runner = FastQCRunner(opts)
162 fastqc_runner.run_fastqc() 161 fastqc_runner.run_fastqc()