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comparison rgFastQC.xml @ 7:3fdc1a74d866 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqc commit 0a6b68fa8ae5c04f18c4a517fc73a819f765700b
author devteam
date Mon, 11 Apr 2016 10:27:34 -0400
parents 28d39af2dd06
children 06819360a9e2
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6:28d39af2dd06 7:3fdc1a74d866
1 <tool id="fastqc" name="FastQC" version="0.64"> 1 <tool id="fastqc" name="FastQC" version="0.65">
2 <description>Read Quality reports</description> 2 <description>Read Quality reports</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.11.4">FastQC</requirement> 4 <requirement type="package" version="0.11.4">FastQC</requirement>
5 </requirements> 5 </requirements>
6 <stdio> 6 <stdio>
15 -d "$html_file.files_path" 15 -d "$html_file.files_path"
16 -o "$html_file" 16 -o "$html_file"
17 -t "$text_file" 17 -t "$text_file"
18 -f "$input_file.ext" 18 -f "$input_file.ext"
19 -j "$input_file.name" 19 -j "$input_file.name"
20 -e "\$FASTQC_JAR_PATH/fastqc"
21 #if $contaminants.dataset and str($contaminants) > '' 20 #if $contaminants.dataset and str($contaminants) > ''
22 -c "$contaminants" 21 -c "$contaminants"
23 #end if 22 #end if
24 #if $limits.dataset and str($limits) > '' 23 #if $limits.dataset and str($limits) > ''
25 -l "$limits" 24 -l "$limits"