Mercurial > repos > devteam > fastqc

comparison test-data/fastqc_data2.txt @ 7:3fdc1a74d866 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqc commit 0a6b68fa8ae5c04f18c4a517fc73a819f765700b
author devteam
date Mon, 11 Apr 2016 10:27:34 -0400
parents 8c650f7f76e9
children 2b0c9d9fc6ca
comparison
equal deleted inserted replaced
6:28d39af2dd06 7:3fdc1a74d866
1 ##FastQC 0.11.2 1 ##FastQC 0.11.4
2 >>Basic Statistics pass 2 >>Basic Statistics pass
3 #Measure Value 3 #Measure Value
4 Filename 1000gsample.fastq 4 Filename 1000gsample.fastq
5 File type Conventional base calls 5 File type Conventional base calls
6 Encoding Sanger / Illumina 1.9 6 Encoding Sanger / Illumina 1.9
63 50 20.9356 22.0 16.0 27.0 10.0 30.0 63 50 20.9356 22.0 16.0 27.0 10.0 30.0
64 51 20.6152 21.0 15.0 27.0 9.0 30.0 64 51 20.6152 21.0 15.0 27.0 9.0 30.0
65 52 20.6588 21.0 16.0 27.0 9.0 30.0 65 52 20.6588 21.0 16.0 27.0 9.0 30.0
66 53 19.5852 20.0 14.0 25.0 9.0 29.0 66 53 19.5852 20.0 14.0 25.0 9.0 29.0
67 54 19.9424 21.0 14.0 26.0 7.0 30.0 67 54 19.9424 21.0 14.0 26.0 7.0 30.0
68 >>END_MODULE
69 >>Per tile sequence quality pass
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602 10 46 1.9135298205630704
603 10 47 1.2741568491184836
604 10 48 2.799334226444202
605 10 49 3.441999390209105
606 10 50 4.391043406721156
607 10 51 3.7815999232367545
608 10 52 1.3217607371315836
609 10 53 3.0125314696670173
610 10 54 2.2316249763308633
611 >>END_MODULE 68 >>END_MODULE
612 >>Per base sequence content fail 69 >>Per base sequence content fail
613 #Base G A T C 70 #Base G A T C
614 1 21.5 32.64 25.919999999999998 19.939999999999998 71 1 21.5 32.64 25.919999999999998 19.939999999999998
615 2 24.04 31.72 26.540000000000003 17.7 72 2 24.04 31.72 26.540000000000003 17.7
5809 TTAGTGAAGCTCTCAAACCACTGAAGATTTTTTTCTTTCAAACGTTTCGAACTC 1 0.02 No Hit 5266 TTAGTGAAGCTCTCAAACCACTGAAGATTTTTTTCTTTCAAACGTTTCGAACTC 1 0.02 No Hit
5810 GCAACCCACTCCAGGGCCTCCTCTCTCCTAGGAGCTGGGCAGACAACAGGACAC 1 0.02 No Hit 5267 GCAACCCACTCCAGGGCCTCCTCTCTCCTAGGAGCTGGGCAGACAACAGGACAC 1 0.02 No Hit
5811 TCTACTGCCTGCACTGCCTTTTCATCTAGCTCCAATTTATATTCTTGTAGTTTA 1 0.02 No Hit 5268 TCTACTGCCTGCACTGCCTTTTCATCTAGCTCCAATTTATATTCTTGTAGTTTA 1 0.02 No Hit
5812 >>END_MODULE 5269 >>END_MODULE
5813 >>Adapter Content pass 5270 >>Adapter Content pass
5814 #Position Illumina Universal Adapter Illumina Small RNA Adapter Nextera Transposase Sequence 5271 #Position Illumina Universal Adapter Illumina Small RNA Adapter Nextera Transposase Sequence SOLID Small RNA Adapter
5815 1 0.0 0.0 0.0 5272 1 0.0 0.0 0.0 0.0
5816 2 0.02 0.0 0.0 5273 2 0.02 0.0 0.0 0.0
5817 3 0.02 0.0 0.0 5274 3 0.02 0.0 0.0 0.0
5818 4 0.02 0.0 0.0 5275 4 0.02 0.0 0.0 0.0
5819 5 0.02 0.0 0.0 5276 5 0.02 0.0 0.0 0.0
5820 6 0.02 0.0 0.0 5277 6 0.02 0.0 0.0 0.0
5821 7 0.02 0.0 0.0 5278 7 0.02 0.0 0.0 0.0
5822 8 0.02 0.0 0.0 5279 8 0.02 0.0 0.0 0.0
5823 9 0.02 0.0 0.0 5280 9 0.02 0.0 0.0 0.0
5824 10 0.02 0.0 0.0 5281 10 0.02 0.0 0.0 0.0
5825 11 0.02 0.0 0.0 5282 11 0.02 0.0 0.0 0.0
5826 12 0.02 0.0 0.0 5283 12 0.02 0.0 0.0 0.0
5827 13 0.02 0.0 0.0 5284 13 0.02 0.0 0.0 0.0
5828 14 0.02 0.0 0.0 5285 14 0.02 0.0 0.0 0.0
5829 15 0.02 0.0 0.0 5286 15 0.02 0.0 0.0 0.0
5830 16 0.02 0.0 0.0 5287 16 0.02 0.0 0.0 0.0
5831 17 0.02 0.0 0.0 5288 17 0.02 0.0 0.0 0.0
5832 18 0.02 0.0 0.0 5289 18 0.02 0.0 0.0 0.0
5833 19 0.06 0.0 0.0 5290 19 0.06 0.0 0.0 0.0
5834 20 0.36 0.0 0.0 5291 20 0.36 0.0 0.0 0.0
5835 21 0.36 0.0 0.0 5292 21 0.36 0.0 0.0 0.0
5836 22 0.36 0.0 0.0 5293 22 0.36 0.0 0.0 0.0
5837 23 0.36 0.0 0.0 5294 23 0.36 0.0 0.0 0.0
5838 24 0.36 0.0 0.0 5295 24 0.36 0.0 0.0 0.0
5839 25 0.4 0.0 0.0 5296 25 0.4 0.0 0.0 0.0
5840 26 0.4 0.0 0.0 5297 26 0.4 0.0 0.0 0.0
5841 27 0.42 0.0 0.0 5298 27 0.42 0.0 0.0 0.0
5842 28 0.62 0.0 0.0 5299 28 0.62 0.0 0.0 0.0
5843 29 0.66 0.0 0.0 5300 29 0.66 0.0 0.0 0.0
5844 30 0.68 0.0 0.0 5301 30 0.68 0.0 0.0 0.0
5845 31 0.68 0.0 0.0 5302 31 0.68 0.0 0.0 0.0
5846 32 0.68 0.0 0.0 5303 32 0.68 0.0 0.0 0.0
5847 33 0.68 0.0 0.0 5304 33 0.68 0.0 0.0 0.0
5848 34 0.7 0.0 0.0 5305 34 0.7 0.0 0.0 0.0
5849 35 0.76 0.0 0.0 5306 35 0.76 0.0 0.0 0.0
5850 36 0.8 0.0 0.0 5307 36 0.8 0.0 0.0 0.0
5851 37 0.88 0.0 0.0 5308 37 0.88 0.0 0.0 0.0
5852 38 1.0 0.0 0.0 5309 38 1.0 0.0 0.0 0.0
5853 39 1.12 0.0 0.0 5310 39 1.12 0.0 0.0 0.0
5854 40 1.22 0.0 0.0 5311 40 1.22 0.0 0.0 0.0
5855 41 1.38 0.0 0.0 5312 41 1.38 0.0 0.0 0.0
5856 42 1.48 0.0 0.0 5313 42 1.48 0.0 0.0 0.0
5857 >>END_MODULE 5314 >>END_MODULE
5858 >>Kmer Content pass 5315 >>Kmer Content pass
5859 >>END_MODULE 5316 >>END_MODULE