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comparison test-data/fastqc_data.txt @ 1:8fae48caaf06 draft

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author devteam
date Tue, 11 Nov 2014 12:46:27 -0500
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children 3fdc1a74d866
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0:e28c965eeed4 1:8fae48caaf06
1 ##FastQC 0.11.2
2 >>Basic Statistics pass
3 #Measure Value
4 Filename 1000gsample.fastq
5 File type Conventional base calls
6 Encoding Sanger / Illumina 1.9
7 Total Sequences 5000
8 Sequences flagged as poor quality 0
9 Sequence length 54
10 %GC 43
11 >>END_MODULE
12 >>Per base sequence quality warn
13 #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile
14 1 28.9946 31.0 27.0 33.0 22.0 34.0
15 2 28.486 30.0 26.0 32.0 21.0 33.0
16 3 28.5272 30.0 26.0 32.0 21.0 34.0
17 4 28.6252 30.0 26.0 32.0 22.0 33.0
18 5 28.4804 30.0 26.0 32.0 21.0 33.0
19 6 28.5128 30.0 26.0 32.0 22.0 33.0
20 7 28.4102 30.0 26.0 32.0 21.0 33.0
21 8 28.4674 30.0 26.0 32.0 22.0 33.0
22 9 28.182 30.0 26.0 32.0 21.0 33.0
23 10 28.0908 30.0 26.0 32.0 21.0 33.0
24 11 28.1876 30.0 26.0 32.0 21.0 33.0
25 12 28.1742 30.0 26.0 32.0 21.0 33.0
26 13 27.923 30.0 25.0 32.0 20.0 33.0
27 14 27.8984 29.0 25.0 32.0 21.0 33.0
28 15 27.6112 29.0 25.0 32.0 20.0 33.0
29 16 27.6638 29.0 25.0 32.0 20.0 33.0
30 17 27.5734 29.0 25.0 32.0 20.0 33.0
31 18 27.6348 29.0 25.0 32.0 20.0 33.0
32 19 27.6526 29.0 25.0 32.0 20.0 33.0
33 20 27.2716 29.0 24.0 32.0 19.0 33.0
34 21 27.2642 29.0 25.0 31.0 19.0 33.0
35 22 26.881 28.0 24.0 31.0 19.0 33.0
36 23 26.8124 28.0 24.0 31.0 19.0 33.0
37 24 26.8204 28.0 24.0 31.0 19.0 33.0
38 25 26.6606 28.0 24.0 31.0 18.0 33.0
39 26 26.3806 28.0 23.0 31.0 18.0 33.0
40 27 25.947 28.0 23.0 31.0 17.0 33.0
41 28 25.7446 27.0 22.0 31.0 16.0 33.0
42 29 25.6856 27.0 22.0 31.0 16.0 33.0
43 30 25.5228 27.0 22.0 31.0 16.0 33.0
44 31 25.354 27.0 22.0 30.0 16.0 32.0
45 32 25.1656 27.0 22.0 30.0 16.0 32.0
46 33 25.0164 26.0 21.0 30.0 15.0 32.0
47 34 24.75 26.0 21.0 30.0 15.0 32.0
48 35 24.3926 26.0 21.0 30.0 15.0 32.0
49 36 24.1122 25.0 20.0 30.0 14.0 32.0
50 37 23.8612 25.0 20.0 29.0 13.0 32.0
51 38 23.7544 25.0 20.0 29.0 13.0 32.0
52 39 23.485 25.0 19.0 29.0 13.0 32.0
53 40 23.1984 24.0 19.0 29.0 13.0 32.0
54 41 23.0976 24.0 19.0 29.0 13.0 32.0
55 42 22.9212 24.0 19.0 28.0 13.0 31.0
56 43 22.5172 24.0 18.0 28.0 12.0 31.0
57 44 22.3234 23.0 18.0 28.0 12.0 31.0
58 45 22.1372 23.0 18.0 28.0 11.0 31.0
59 46 22.2166 23.0 18.0 28.0 11.0 31.0
60 47 22.075 23.0 18.0 28.0 11.0 31.0
61 48 21.4592 22.0 17.0 27.0 11.0 31.0
62 49 21.0954 22.0 16.0 27.0 10.0 30.0
63 50 20.9356 22.0 16.0 27.0 10.0 30.0
64 51 20.6152 21.0 15.0 27.0 9.0 30.0
65 52 20.6588 21.0 16.0 27.0 9.0 30.0
66 53 19.5852 20.0 14.0 25.0 9.0 29.0
67 54 19.9424 21.0 14.0 26.0 7.0 30.0
68 >>END_MODULE
69 >>Per tile sequence quality pass
70 #Tile Base Mean
71 1 1 0.4542485249902164
72 1 2 0.02493171505959424
73 1 3 0.004493134032774293
74 1 4 0.6119404948560927
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82 1 12 0.9171964750225641
83 1 13 1.0716973449965757
84 1 14 0.562649938864773
85 1 15 0.5112535943737946
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99 1 29 -1.0803714983510417
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533 9 31 -0.04245487959043359
534 9 32 1.076907059976115
535 9 33 1.2108206172912048
536 9 34 0.16209958555226933
537 9 35 -0.3299113957937472
538 9 36 0.6554522800302856
539 9 37 0.16174529363787826
540 9 38 -0.29240606793036505
541 9 39 -0.46176581588346366
542 9 40 -0.17477146326251614
543 9 41 -0.3995362012241799
544 9 42 0.40059178672989404
545 9 43 -0.7929919952170579
546 9 44 -0.9578218797400382
547 9 45 0.6699979276194128
548 9 46 0.124640931674179
549 9 47 0.2408235157851486
550 9 48 -0.37844355133357865
551 9 49 0.3419993902091072
552 9 50 -0.8756232599455132
553 9 51 0.44826658990341883
554 9 52 0.34398295935380574
555 9 53 0.5347536918892395
556 9 54 -1.9350416903358045
557 10 1 1.0952741660158587
558 10 2 1.4967265868544644
559 10 3 1.317313646853286
560 10 4 -0.3547261718105723
561 10 5 -1.4614160888841212
562 10 6 0.29727022338276043
563 10 7 0.570675320700893
564 10 8 0.7553002155559696
565 10 9 -0.11076049838197832
566 10 10 0.9660975739236584
567 10 11 1.3200025237621134
568 10 12 0.5761708339969225
569 10 13 1.1742614475606779
570 10 14 0.49085506706990145
571 10 15 0.6676638507840522
572 10 16 0.5944615288093544
573 10 17 -0.2984472560687408
574 10 18 -0.07766539513342252
575 10 19 0.871947435911629
576 10 20 0.6934287366512422
577 10 21 -0.4924561769574538
578 10 22 0.13444280641211037
579 10 23 1.3356991062361878
580 10 24 0.6140473337404266
581 10 25 0.1933327343301734
582 10 26 1.2592163562496026
583 10 27 2.2112073859644212
584 10 28 1.7964721240680284
585 10 29 0.7632182452387006
586 10 30 1.604649899688269
587 10 31 1.8797673426317907
588 10 32 0.47690705997611715
589 10 33 -0.15584604937545876
590 10 34 1.8398773633300465
591 10 35 2.981199715317363
592 10 36 0.8110078355858406
593 10 37 1.8617452936378776
594 10 38 1.7742605987363014
595 10 39 3.2937897396720928
596 10 40 3.2918952034041524
597 10 41 1.3115749098869323
598 10 42 2.911702897841007
599 10 43 2.9292302270051636
600 10 44 1.964400342482186
601 10 45 0.5477757053971892
602 10 46 1.9135298205630704
603 10 47 1.2741568491184836
604 10 48 2.799334226444202
605 10 49 3.441999390209105
606 10 50 4.391043406721156
607 10 51 3.7815999232367545
608 10 52 1.3217607371315836
609 10 53 3.0125314696670173
610 10 54 2.2316249763308633
611 >>END_MODULE
612 >>Per sequence quality scores warn
613 #Quality Count
614 8 4.0
615 9 4.0
616 10 2.0
617 11 2.0
618 12 4.0
619 13 6.0
620 14 4.0
621 15 11.0
622 16 20.0
623 17 50.0
624 18 98.0
625 19 149.0
626 20 210.0
627 21 275.0
628 22 367.0
629 23 425.0
630 24 518.0
631 25 540.0
632 26 539.0
633 27 532.0
634 28 468.0
635 29 360.0
636 30 234.0
637 31 122.0
638 32 51.0
639 33 5.0
640 >>END_MODULE
641 >>Per base sequence content warn
642 #Base G A T C
643 1 21.5 32.64 25.919999999999998 19.939999999999998
644 2 24.04 31.72 26.540000000000003 17.7
645 3 21.58 28.860000000000003 29.42 20.14
646 4 21.58 28.28 28.9 21.240000000000002
647 5 21.16 29.720000000000002 28.32 20.8
648 6 22.38 29.24 25.72 22.66
649 7 21.34 30.320000000000004 28.24 20.1
650 8 21.58 29.060000000000002 27.939999999999998 21.42
651 9 20.3 28.48 28.58 22.64
652 10 21.2 30.84 26.56 21.4
653 11 21.14 28.64 27.279999999999998 22.939999999999998
654 12 21.32 28.88 28.999999999999996 20.8
655 13 20.36 29.220000000000002 28.939999999999998 21.48
656 14 20.02 29.2 29.220000000000002 21.560000000000002
657 15 20.200000000000003 29.220000000000002 28.38 22.2
658 16 20.34 29.38 29.299999999999997 20.979999999999997
659 17 20.599999999999998 29.14 28.499999999999996 21.759999999999998
660 18 20.599999999999998 27.92 29.4 22.08
661 19 21.66 28.46 28.58 21.3
662 20 20.0 29.24 28.96 21.8
663 21 21.72 28.499999999999996 28.18 21.6
664 22 20.52 30.880000000000003 27.3 21.3
665 23 20.72 28.9 29.720000000000002 20.66
666 24 21.12 28.62 27.58 22.68
667 25 21.099999999999998 29.060000000000002 29.160000000000004 20.68
668 26 22.18887555022009 28.391356542617046 28.131252501000397 21.288515406162464
669 27 21.344268853770753 28.525705141028208 28.765753150630125 21.364272854570913
670 28 19.34 30.54 27.46 22.66
671 29 20.90418083616723 29.12582516503301 29.045809161832363 20.924184836967395
672 30 21.099999999999998 29.4 27.439999999999998 22.06
673 31 20.84 28.04 28.660000000000004 22.46
674 32 19.847939175670266 28.371348539415763 28.7515006002401 23.02921168467387
675 33 22.084416883376676 28.62572514502901 27.265453090618124 22.024404880976196
676 34 21.304260852170433 29.285857171434287 27.265453090618124 22.144428885777156
677 35 21.084216843368676 29.425885177035404 28.225645129025807 21.264252850570113
678 36 21.404280856171233 28.665733146629325 28.805761152230446 21.124224844968996
679 37 20.888355342136855 29.43177270908363 28.53141256502601 21.1484593837535
680 38 21.864372874574915 29.02580516103221 28.065613122624526 21.044208841768352
681 39 21.928771508603443 28.251300520208083 27.050820328131252 22.769107643057225
682 40 21.32 28.499999999999996 27.82 22.36
683 41 21.673003802281368 28.116870122073244 27.61656994196518 22.59355613368021
684 42 22.29337602561537 28.036822093255953 27.71662997798679 21.953171903141886
685 43 21.244248849769953 28.425685137027408 27.825565113022606 22.504500900180034
686 44 21.404280856171233 28.985797159431886 27.545509101820365 22.064412882576516
687 45 21.86 29.28 26.740000000000002 22.12
688 46 21.26 27.54 27.74 23.46
689 47 21.628651460584233 28.271308523409367 28.051220488195277 22.048819527811126
690 48 21.279999999999998 28.439999999999998 26.400000000000002 23.880000000000003
691 49 21.044208841768352 29.045809161832363 27.185437087417487 22.724544908981798
692 50 21.82873149259704 28.15126050420168 26.810724289715886 23.209283713485394
693 51 21.028411364545818 27.73109243697479 28.011204481792717 23.229291716686674
694 52 21.824364872974595 30.146029205841167 25.94518903780756 22.084416883376676
695 53 21.164232846569313 28.325665133026607 28.045609121824366 22.464492898579717
696 54 21.53907976692787 27.024311834438418 26.90375728350412 24.5328511151296
697 >>END_MODULE
698 >>Per sequence GC content warn
699 #GC Content Count
700 0 3.0
701 1 5.0
702 2 7.0
703 3 7.0
704 4 7.0
705 5 5.0
706 6 2.0
707 7 1.0
708 8 1.5
709 9 2.0
710 10 1.5
711 11 1.0
712 12 2.5
713 13 4.0
714 14 4.0
715 15 4.0
716 16 5.0
717 17 6.0
718 18 11.0
719 19 19.5
720 20 23.0
721 21 37.5
722 22 52.0
723 23 61.0
724 24 70.0
725 25 79.0
726 26 88.0
727 27 117.5
728 28 147.0
729 29 159.5
730 30 172.0
731 31 203.0
732 32 243.0
733 33 252.0
734 34 290.0
735 35 328.0
736 36 330.0
737 37 332.0
738 38 332.5
739 39 333.0
740 40 342.0
741 41 351.0
742 42 343.5
743 43 336.0
744 44 318.5
745 45 279.5
746 46 258.0
747 47 254.5
748 48 251.0
749 49 234.5
750 50 218.0
751 51 209.5
752 52 201.0
753 53 198.5
754 54 196.0
755 55 177.0
756 56 162.5
757 57 167.0
758 58 147.0
759 59 127.0
760 60 106.5
761 61 86.0
762 62 85.0
763 63 84.0
764 64 61.5
765 65 39.0
766 66 42.5
767 67 46.0
768 68 34.0
769 69 17.0
770 70 12.0
771 71 14.0
772 72 16.0
773 73 12.5
774 74 9.0
775 75 6.5
776 76 4.0
777 77 4.5
778 78 5.0
779 79 5.0
780 80 5.0
781 81 3.0
782 82 1.0
783 83 1.0
784 84 1.0
785 85 1.0
786 86 1.0
787 87 1.0
788 88 1.0
789 89 1.0
790 90 2.0
791 91 3.0
792 92 2.5
793 93 2.0
794 94 2.0
795 95 3.0
796 96 4.0
797 97 5.0
798 98 6.0
799 99 3.5
800 100 1.0
801 >>END_MODULE
802 >>Per base N content pass
803 #Base N-Count
804 1 0.0
805 2 0.0
806 3 0.0
807 4 0.0
808 5 0.0
809 6 0.0
810 7 0.0
811 8 0.0
812 9 0.0
813 10 0.0
814 11 0.0
815 12 0.0
816 13 0.0
817 14 0.0
818 15 0.0
819 16 0.0
820 17 0.0
821 18 0.0
822 19 0.0
823 20 0.0
824 21 0.0
825 22 0.0
826 23 0.0
827 24 0.0
828 25 0.0
829 26 0.04
830 27 0.02
831 28 0.0
832 29 0.02
833 30 0.0
834 31 0.0
835 32 0.04
836 33 0.02
837 34 0.02
838 35 0.02
839 36 0.02
840 37 0.04
841 38 0.02
842 39 0.04
843 40 0.0
844 41 0.06
845 42 0.06
846 43 0.02
847 44 0.02
848 45 0.0
849 46 0.0
850 47 0.04
851 48 0.0
852 49 0.02
853 50 0.04
854 51 0.04
855 52 0.02
856 53 0.02
857 54 0.45999999999999996
858 >>END_MODULE
859 >>Sequence Length Distribution pass
860 #Length Count
861 54 5000.0
862 >>END_MODULE
863 >>Sequence Duplication Levels pass
864 #Total Deduplicated Percentage 99.52
865 #Duplication Level Percentage of deduplicated Percentage of total
866 1 99.81913183279742 99.33999999999999
867 2 0.08038585209003216 0.16
868 3 0.04019292604501608 0.12
869 4 0.0 0.0
870 5 0.02009646302250804 0.1
871 6 0.0 0.0
872 7 0.04019292604501608 0.27999999999999997
873 8 0.0 0.0
874 9 0.0 0.0
875 >10 0.0 0.0
876 >50 0.0 0.0
877 >100 0.0 0.0
878 >500 0.0 0.0
879 >1k 0.0 0.0
880 >5k 0.0 0.0
881 >10k+ 0.0 0.0
882 >>END_MODULE
883 >>Overrepresented sequences warn
884 #Sequence Count Percentage Possible Source
885 CGGAAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT 7 0.13999999999999999 Illumina Paired End PCR Primer 2 (96% over 33bp)
886 CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC 7 0.13999999999999999 Illumina Paired End PCR Primer 2 (100% over 35bp)
887 >>END_MODULE
888 >>Adapter Content pass
889 #Position Illumina Universal Adapter Illumina Small RNA Adapter Nextera Transposase Sequence
890 1 0.0 0.0 0.0
891 2 0.02 0.0 0.0
892 3 0.02 0.0 0.0
893 4 0.02 0.0 0.0
894 5 0.02 0.0 0.0
895 6 0.02 0.0 0.0
896 7 0.02 0.0 0.0
897 8 0.02 0.0 0.0
898 9 0.02 0.0 0.0
899 10 0.02 0.0 0.0
900 11 0.02 0.0 0.0
901 12 0.02 0.0 0.0
902 13 0.02 0.0 0.0
903 14 0.02 0.0 0.0
904 15 0.02 0.0 0.0
905 16 0.02 0.0 0.0
906 17 0.02 0.0 0.0
907 18 0.02 0.0 0.0
908 19 0.06 0.0 0.0
909 20 0.36 0.0 0.0
910 21 0.36 0.0 0.0
911 22 0.36 0.0 0.0
912 23 0.36 0.0 0.0
913 24 0.36 0.0 0.0
914 25 0.4 0.0 0.0
915 26 0.4 0.0 0.0
916 27 0.42 0.0 0.0
917 28 0.62 0.0 0.0
918 29 0.66 0.0 0.0
919 30 0.68 0.0 0.0
920 31 0.68 0.0 0.0
921 32 0.68 0.0 0.0
922 33 0.68 0.0 0.0
923 34 0.7 0.0 0.0
924 35 0.76 0.0 0.0
925 36 0.8 0.0 0.0
926 37 0.88 0.0 0.0
927 38 1.0 0.0 0.0
928 39 1.12 0.0 0.0
929 40 1.22 0.0 0.0
930 41 1.38 0.0 0.0
931 42 1.48 0.0 0.0
932 >>END_MODULE
933 >>Kmer Content pass
934 >>END_MODULE