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comparison test-data/fastqc_data.txt @ 23:5ec9f6bceaee draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastqc commit 9aa395df821f0d3607867c83536ac97f9ffe8b29
author iuc
date Thu, 08 Jun 2023 20:02:11 +0000
parents 3d0c7bdf12f5
children
comparison
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22:3d0c7bdf12f5 23:5ec9f6bceaee
1 ##FastQC 0.11.9 1 ##FastQC 0.12.1
2 >>Basic Statistics pass 2 >>Basic Statistics pass
3 #Measure Value 3 #Measure Value
4 Filename 1000trimmed_fastq 4 Filename 1000trimmed_fastq
5 File type Conventional base calls 5 File type Conventional base calls
6 Encoding Sanger / Illumina 1.9 6 Encoding Sanger / Illumina 1.9
7 Total Sequences 4905 7 Total Sequences 4905
8 Total Bases 254.2 kbp
8 Sequences flagged as poor quality 0 9 Sequences flagged as poor quality 0
9 Sequence length 1-108 10 Sequence length 1-108
10 %GC 40 11 %GC 40
11 >>END_MODULE 12 >>END_MODULE
12 >>Per base sequence quality pass 13 >>Per base sequence quality pass
342 100-104 0.0 343 100-104 0.0
343 105-109 1325.0 344 105-109 1325.0
344 >>END_MODULE 345 >>END_MODULE
345 >>Sequence Duplication Levels pass 346 >>Sequence Duplication Levels pass
346 #Total Deduplicated Percentage 98.73598369011212 347 #Total Deduplicated Percentage 98.73598369011212
347 #Duplication Level Percentage of deduplicated Percentage of total 348 #Duplication Level Percentage of total
348 1 99.44249432170142 98.1855249745158 349 1 98.1855249745158
349 2 0.47491224447656405 0.9378185524974516 350 2 0.9378185524974516
350 3 0.041296716911005574 0.12232415902140673 351 3 0.12232415902140673
351 4 0.020648358455502787 0.08154943934760449 352 4 0.08154943934760449
352 5 0.0 0.0 353 5 0.0
353 6 0.0 0.0 354 6 0.0
354 7 0.0 0.0 355 7 0.0
355 8 0.0 0.0 356 8 0.0
356 9 0.0 0.0 357 9 0.0
357 >10 0.020648358455502787 0.672782874617737 358 >10 0.672782874617737
358 >50 0.0 0.0 359 >50 0.0
359 >100 0.0 0.0 360 >100 0.0
360 >500 0.0 0.0 361 >500 0.0
361 >1k 0.0 0.0 362 >1k 0.0
362 >5k 0.0 0.0 363 >5k 0.0
363 >10k+ 0.0 0.0 364 >10k+ 0.0
364 >>END_MODULE 365 >>END_MODULE
365 >>Overrepresented sequences warn 366 >>Overrepresented sequences warn
366 #Sequence Count Percentage Possible Source 367 #Sequence Count Percentage Possible Source
367 ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCAT 33 0.672782874617737 No Hit 368 ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCAT 33 0.672782874617737 No Hit
368 >>END_MODULE 369 >>END_MODULE
369 >>Adapter Content pass 370 >>Adapter Content pass
370 #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 371 #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence PolyA PolyG
371 1 0.0 0.0 0.0 0.0 0.0 372 1 0.0 0.0 0.0 0.0 0.020387359836901122 0.0
372 2 0.0 0.0 0.0 0.0 0.0 373 2 0.0 0.0 0.0 0.0 0.06116207951070336 0.0
373 3 0.0 0.0 0.0 0.0 0.0 374 3 0.0 0.0 0.0 0.0 0.06116207951070336 0.0
374 4 0.0 0.0 0.0 0.0 0.0 375 4 0.0 0.0 0.0 0.0 0.06116207951070336 0.0
375 5 0.0 0.0 0.0 0.0 0.0 376 5 0.0 0.0 0.0 0.0 0.12232415902140673 0.0
376 6 0.0 0.0 0.0 0.0 0.0 377 6 0.0 0.0 0.0 0.0 0.12232415902140673 0.0
377 7 0.0 0.0 0.0 0.0 0.0 378 7 0.0 0.0 0.0 0.0 0.12232415902140673 0.0
378 8 0.0 0.0 0.0 0.0 0.0 379 8 0.0 0.0 0.0 0.0 0.14271151885830785 0.0
379 9 0.0 0.0 0.0 0.0 0.0 380 9 0.0 0.0 0.0 0.0 0.14271151885830785 0.0
380 10-11 0.0 0.0 0.0 0.0 0.0 381 10-11 0.0 0.0 0.0 0.0 0.14271151885830785 0.0
381 12-13 0.0 0.0 0.0 0.0 0.0 382 12-13 0.0 0.0 0.0 0.0 0.1529051987767584 0.0
382 14-15 0.0 0.0 0.0 0.0 0.0 383 14-15 0.0 0.0 0.0 0.0 0.17329255861365955 0.0
383 16-17 0.0 0.0 0.0 0.0 0.0 384 16-17 0.0 0.0 0.0 0.0 0.21406727828746175 0.0
384 18-19 0.0 0.0 0.0 0.0 0.0 385 18-19 0.0 0.0 0.0 0.0 0.22426095820591233 0.0
385 20-21 0.12232415902140673 0.0 0.0 0.0 0.0 386 20-21 0.12232415902140673 0.0 0.0 0.0 0.24464831804281345 0.0
386 22-23 0.12232415902140673 0.0 0.0 0.0 0.0 387 22-23 0.12232415902140673 0.0 0.0 0.0 0.24464831804281345 0.0
387 24-25 0.12232415902140673 0.0 0.0 0.0 0.0 388 24-25 0.12232415902140673 0.0 0.0 0.0 0.24464831804281345 0.0
388 26-27 0.1325178389398573 0.0 0.0 0.0 0.0 389 26-27 0.1325178389398573 0.0 0.0 0.0 0.24464831804281345 0.0
389 28-29 0.2038735983690112 0.0 0.0 0.0 0.0 390 28-29 0.2038735983690112 0.0 0.0 0.0 0.24464831804281345 0.0
390 30-31 0.22426095820591233 0.0 0.0 0.0 0.0 391 30-31 0.22426095820591233 0.0 0.0 0.0 0.24464831804281345 0.0
391 32-33 0.22426095820591233 0.0 0.0 0.0 0.0 392 32-33 0.22426095820591233 0.0 0.0 0.0 0.2650356778797146 0.0
392 34-35 0.24464831804281345 0.0 0.0 0.0 0.0 393 34-35 0.24464831804281345 0.0 0.0 0.0 0.29561671763506625 0.0
393 36-37 0.3058103975535168 0.0 0.0 0.0 0.0 394 36-37 0.3058103975535168 0.0 0.0 0.0 0.31600407747196735 0.0
394 38-39 0.4383282364933741 0.0 0.0 0.0 0.0 395 38-39 0.4383282364933741 0.0 0.0 0.0 0.32619775739041795 0.0
395 40-41 0.4689092762487258 0.0 0.0 0.0 0.0 396 40-41 0.4689092762487258 0.0 0.0 0.0 0.32619775739041795 0.0
396 42-43 0.4689092762487258 0.0 0.0 0.0 0.0 397 42-43 0.4689092762487258 0.0 0.0 0.0 0.32619775739041795 0.0
397 44-45 0.4689092762487258 0.0 0.0 0.0 0.0 398 44-45 0.4689092762487258 0.0 0.0 0.0 0.32619775739041795 0.0
398 46-47 0.4689092762487258 0.0 0.0 0.0 0.0 399 46-47 0.4689092762487258 0.0 0.0 0.0 0.32619775739041795 0.0
399 48-49 0.4689092762487258 0.0 0.0 0.0 0.0 400 48-49 0.4689092762487258 0.0 0.0 0.0 0.32619775739041795 0.0
400 50-51 0.4689092762487258 0.0 0.0 0.0 0.0 401 50-51 0.4689092762487258 0.0 0.0 0.0 0.32619775739041795 0.0
401 52-53 0.4689092762487258 0.0 0.0 0.0 0.0 402 52-53 0.4689092762487258 0.0 0.0 0.0 0.32619775739041795 0.0
402 54-55 0.4689092762487258 0.0 0.0 0.0 0.0 403 54-55 0.4689092762487258 0.0 0.0 0.0 0.32619775739041795 0.0
403 56-57 0.4689092762487258 0.0 0.0 0.0 0.0 404 56-57 0.4689092762487258 0.0 0.0 0.0 0.32619775739041795 0.0
404 58-59 0.4689092762487258 0.0 0.0 0.0 0.0 405 58-59 0.4689092762487258 0.0 0.0 0.0 0.32619775739041795 0.0
405 60-61 0.4689092762487258 0.0 0.0 0.0 0.0 406 60-61 0.4689092762487258 0.0 0.0 0.0 0.32619775739041795 0.0
406 62-63 0.4689092762487258 0.0 0.0 0.0 0.0 407 62-63 0.4689092762487258 0.0 0.0 0.0 0.32619775739041795 0.0
407 64-65 0.4689092762487258 0.0 0.0 0.0 0.0 408 64-65 0.4689092762487258 0.0 0.0 0.0 0.32619775739041795 0.0
408 66-67 0.4689092762487258 0.0 0.0 0.0 0.0 409 66-67 0.4689092762487258 0.0 0.0 0.0 0.32619775739041795 0.0
409 68-69 0.4689092762487258 0.0 0.0 0.0 0.0 410 68-69 0.4689092762487258 0.0 0.0 0.0 0.32619775739041795 0.0
410 70-71 0.4689092762487258 0.0 0.0 0.0 0.0 411 70-71 0.4689092762487258 0.0 0.0 0.0 0.32619775739041795 0.0
411 72-73 0.4689092762487258 0.0 0.0 0.0 0.0 412 72-73 0.4689092762487258 0.0 0.0 0.0 0.32619775739041795 0.0
412 74-75 0.4689092762487258 0.0 0.0 0.0 0.0 413 74-75 0.4689092762487258 0.0 0.0 0.0 0.32619775739041795 0.0
413 76-77 0.4689092762487258 0.0 0.0 0.0 0.0 414 76-77 0.4689092762487258 0.0 0.0 0.0 0.32619775739041795 0.0
414 78-79 0.4689092762487258 0.0 0.0 0.0 0.0 415 78-79 0.4689092762487258 0.0 0.0 0.0 0.32619775739041795 0.0
415 80-81 0.4689092762487258 0.0 0.0 0.0 0.0 416 80-81 0.4689092762487258 0.0 0.0 0.0 0.32619775739041795 0.0
416 82-83 0.4689092762487258 0.0 0.0 0.0 0.0 417 82-83 0.4689092762487258 0.0 0.0 0.0 0.32619775739041795 0.0
417 84-85 0.4689092762487258 0.0 0.0 0.0 0.0 418 84-85 0.4689092762487258 0.0 0.0 0.0 0.32619775739041795 0.0
418 86-87 0.4689092762487258 0.0 0.0 0.0 0.0 419 86-87 0.4689092762487258 0.0 0.0 0.0 0.32619775739041795 0.0
419 88-89 0.4689092762487258 0.0 0.0 0.0 0.0 420 88-89 0.4689092762487258 0.0 0.0 0.0 0.32619775739041795 0.0
420 90-91 0.4689092762487258 0.0 0.0 0.0 0.0 421 90-91 0.4689092762487258 0.0 0.0 0.0 0.32619775739041795 0.0
421 92-93 0.4689092762487258 0.0 0.0 0.0 0.0 422 92-93 0.4689092762487258 0.0 0.0 0.0 0.32619775739041795 0.0
422 94-95 0.4689092762487258 0.0 0.0 0.0 0.0 423 94-95 0.4689092762487258 0.0 0.0 0.0 0.32619775739041795 0.0
423 96-97 0.4689092762487258 0.0 0.0 0.0 0.0 424 96-97 0.4689092762487258 0.0 0.0 0.0 0.32619775739041795 0.0
424 >>END_MODULE 425 >>END_MODULE