--- a/test-data/fastqc_customlimits.txt	Fri May 10 14:23:53 2019 -0400
+++ b/test-data/fastqc_customlimits.txt	Thu May 16 07:45:56 2019 -0400
@@ -1,15 +1,15 @@
 # For each of the modules you can choose to not run that
 # module at all by setting the value below to 1 for the
 # modules you want to remove.
-duplication 		ignore 		1
+duplication 		ignore 		0
 kmer 				ignore 		0
 n_content 			ignore 		0
 overrepresented 	ignore 		0
 quality_base 		ignore 		0
 sequence 			ignore 		0
 gc_sequence			ignore 		0
-quality_sequence	ignore		1
-tile				ignore		1
+quality_sequence	ignore		0
+tile				ignore		0
 sequence_length		ignore		0
 adapter				ignore		0
 
@@ -34,7 +34,7 @@
 # threshold for the overrepresented sequences to be reported
 # at all as the proportion of the library which must be seen
 # as a single sequence
-overrepresented	warn	0.001
+overrepresented	warn	0.1
 overrepresented	error	1
 
 # The per base quality filter uses two values, one for the value
@@ -42,13 +42,13 @@
 # median quality.  Failing either of these will trigger the alert
 quality_base_lower	warn	10
 quality_base_lower	error	5
-quality_base_median	warn	50
+quality_base_median	warn	25
 quality_base_median	error	20
 
 # The per base sequence content module tests the maximum deviation
 # between A and T or C and G
-sequence	warn	2
-sequence	error	5
+sequence	warn	10
+sequence	error	20
 
 # The per sequence GC content tests the maximum deviation between
 # the theoretical distribution and the real distribution
@@ -81,4 +81,4 @@
 adapter	error	10
 
 
-	
\ No newline at end of file
+