Mercurial > repos > devteam > fastqc
view test-data/fastqc_data.txt @ 14:f2e8552cf1d0 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastqc commit 4a3c9f195ba5d899b1a1ce5e80281cdf230f456a
author | iuc |
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date | Mon, 23 Oct 2017 13:26:32 -0400 |
parents | 3fdc1a74d866 |
children | 2b0c9d9fc6ca |
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##FastQC 0.11.4 >>Basic Statistics pass #Measure Value Filename 1000gsample.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5000 Sequences flagged as poor quality 0 Sequence length 54 %GC 43 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.9946 31.0 27.0 33.0 22.0 34.0 2 28.486 30.0 26.0 32.0 21.0 33.0 3 28.5272 30.0 26.0 32.0 21.0 34.0 4 28.6252 30.0 26.0 32.0 22.0 33.0 5 28.4804 30.0 26.0 32.0 21.0 33.0 6 28.5128 30.0 26.0 32.0 22.0 33.0 7 28.4102 30.0 26.0 32.0 21.0 33.0 8 28.4674 30.0 26.0 32.0 22.0 33.0 9 28.182 30.0 26.0 32.0 21.0 33.0 10 28.0908 30.0 26.0 32.0 21.0 33.0 11 28.1876 30.0 26.0 32.0 21.0 33.0 12 28.1742 30.0 26.0 32.0 21.0 33.0 13 27.923 30.0 25.0 32.0 20.0 33.0 14 27.8984 29.0 25.0 32.0 21.0 33.0 15 27.6112 29.0 25.0 32.0 20.0 33.0 16 27.6638 29.0 25.0 32.0 20.0 33.0 17 27.5734 29.0 25.0 32.0 20.0 33.0 18 27.6348 29.0 25.0 32.0 20.0 33.0 19 27.6526 29.0 25.0 32.0 20.0 33.0 20 27.2716 29.0 24.0 32.0 19.0 33.0 21 27.2642 29.0 25.0 31.0 19.0 33.0 22 26.881 28.0 24.0 31.0 19.0 33.0 23 26.8124 28.0 24.0 31.0 19.0 33.0 24 26.8204 28.0 24.0 31.0 19.0 33.0 25 26.6606 28.0 24.0 31.0 18.0 33.0 26 26.3806 28.0 23.0 31.0 18.0 33.0 27 25.947 28.0 23.0 31.0 17.0 33.0 28 25.7446 27.0 22.0 31.0 16.0 33.0 29 25.6856 27.0 22.0 31.0 16.0 33.0 30 25.5228 27.0 22.0 31.0 16.0 33.0 31 25.354 27.0 22.0 30.0 16.0 32.0 32 25.1656 27.0 22.0 30.0 16.0 32.0 33 25.0164 26.0 21.0 30.0 15.0 32.0 34 24.75 26.0 21.0 30.0 15.0 32.0 35 24.3926 26.0 21.0 30.0 15.0 32.0 36 24.1122 25.0 20.0 30.0 14.0 32.0 37 23.8612 25.0 20.0 29.0 13.0 32.0 38 23.7544 25.0 20.0 29.0 13.0 32.0 39 23.485 25.0 19.0 29.0 13.0 32.0 40 23.1984 24.0 19.0 29.0 13.0 32.0 41 23.0976 24.0 19.0 29.0 13.0 32.0 42 22.9212 24.0 19.0 28.0 13.0 31.0 43 22.5172 24.0 18.0 28.0 12.0 31.0 44 22.3234 23.0 18.0 28.0 12.0 31.0 45 22.1372 23.0 18.0 28.0 11.0 31.0 46 22.2166 23.0 18.0 28.0 11.0 31.0 47 22.075 23.0 18.0 28.0 11.0 31.0 48 21.4592 22.0 17.0 27.0 11.0 31.0 49 21.0954 22.0 16.0 27.0 10.0 30.0 50 20.9356 22.0 16.0 27.0 10.0 30.0 51 20.6152 21.0 15.0 27.0 9.0 30.0 52 20.6588 21.0 16.0 27.0 9.0 30.0 53 19.5852 20.0 14.0 25.0 9.0 29.0 54 19.9424 21.0 14.0 26.0 7.0 30.0 >>END_MODULE >>Per tile sequence quality pass #Tile Base Mean 1 1 0.4542485249902164 1 2 0.02493171505959424 1 3 0.004493134032774293 1 4 0.6119404948560927 1 5 0.5283275008594686 1 6 0.3741933003058371 1 7 -0.2985554485298749 1 8 0.6040181642739206 1 9 0.43795745033596845 1 10 0.05327706110314523 1 11 0.8097461135057031 1 12 0.9171964750225641 1 13 1.0716973449965757 1 14 0.562649938864773 1 15 0.5112535943737946 1 16 0.7098461441939676 1 17 0.3989886413671577 1 18 0.2351551176870892 1 19 0.002716666680861124 1 20 -0.5270840838615776 1 21 0.08959510509382795 1 22 -0.6322238602545553 1 23 -0.8566085860715056 1 24 -0.8167218970288026 1 25 0.7728199138173544 1 26 -0.26898877195552373 1 27 -0.7734079986509634 1 28 0.46313879073469266 1 29 -1.0803714983510417 1 30 -0.9107347156963463 1 31 -1.1279249650605188 1 32 0.03588141895047414 1 33 -0.3276409211703317 1 34 0.07833890179158587 1 35 -0.8393131051954583 1 36 -1.024889600311596 1 37 -1.4177418858492992 1 38 -1.912918888443187 1 39 -1.880569234686881 1 40 -0.9901560786471286 1 41 -1.9499635516515283 1 42 -2.3754765893384793 1 43 -1.6682056704307335 1 44 -2.2432919652101226 1 45 -2.1214550638335794 1 46 -1.6941624871292404 1 47 -2.261740586778952 1 48 -0.47246064535067234 1 49 -1.345180096970381 1 50 -1.3012642855865373 1 51 -1.6748103331735038 1 52 -1.4936238782530324 1 53 -0.9900326328970834 1 54 -0.9042724595665739 2 1 0.27305194379363584 2 2 -0.40803531790744074 2 3 -1.054114924575284 2 4 0.02463890755450393 2 5 -1.0899875174555511 2 6 -0.7630472369346997 2 7 -1.2563088062832328 2 8 0.09022085047660511 2 9 -0.8821890698105506 2 10 -1.0053309975049132 2 11 -1.2879339841743942 2 12 -2.149225991399902 2 13 -1.2225639492647176 2 14 -0.7472401710253394 2 15 -0.9942409111207091 2 16 -1.07061783627001 2 17 -1.0825742401957257 2 18 -1.0554431729112004 2 19 -1.374084310120118 2 20 -0.25260300938050406 2 21 -0.7384879229891972 2 22 -0.5973032253339206 2 23 -1.926205655668575 2 24 -1.8018256821325878 2 25 -1.2574609164634758 2 26 -2.588402691369442 2 27 -1.909427534670499 2 28 -2.213051685455781 2 29 -3.343130961110507 2 30 -3.447731052692685 2 31 -3.261502498638052 2 32 -2.596108813039759 2 33 -2.173306366835778 2 34 -2.968059144606464 2 35 -3.110863776746129 2 36 -3.6207381961601897 2 37 -2.8287308968383122 2 38 -2.3431997187240157 2 39 -2.7157340698517167 2 40 -2.8763587648498152 2 41 -3.221758423446399 2 42 -3.735916149778042 2 43 -2.8279126301376927 2 44 -2.034012355930514 2 45 -3.745875088253605 2 46 -3.8848828778496305 2 47 -3.6639383889767565 2 48 -3.0197133926034176 2 49 -3.1119688637591487 2 50 -2.7486391329613866 2 51 -2.4279238862870542 2 52 -3.3607789454081 2 53 -4.239849482713934 2 54 -3.3794861347802474 3 1 0.4228103978999158 3 2 1.0474512245356244 3 3 0.4013716178677811 3 4 -0.7648710993468057 3 5 1.642931737202833 3 6 0.42190790454218075 3 7 0.5808202482371243 3 8 0.22341615758495692 3 9 0.06605109582092084 3 10 1.203778733343949 3 11 -0.3886931284117985 3 12 0.31385199341721304 3 13 0.7829570997345918 3 14 -0.2772608749590866 3 15 -0.2613216564623251 3 16 -0.6475674566978924 3 17 -1.0549689951991752 3 18 -1.3066509023798005 3 19 -0.22225546263909735 3 20 -1.028310393783542 3 21 -0.3112967566675984 3 22 -0.2177311066313692 3 23 1.415409251163723 3 24 1.0256415366389788 3 25 -0.5776817584234486 3 26 0.41573809538003914 3 27 1.098163907703551 3 28 0.5095156023288965 3 29 0.6313341872676865 3 30 0.4032006243259474 3 31 -0.21733410664357322 3 32 -0.1723683023427256 3 33 -0.8558460493754616 3 34 0.4094425807213504 3 35 1.0478663819840293 3 36 2.193616531238014 3 37 0.2458032646523698 3 38 0.5829562509102146 3 39 -0.23954359366124223 3 40 -0.6762207386248349 3 41 1.2420096924956283 3 42 1.0798188398699935 3 43 0.9132881980196572 3 44 0.7368641105981268 3 45 0.004297444527622929 3 46 1.1033848930268384 3 47 0.008939457814136631 3 48 -1.3137092518166682 3 49 -0.5681455373271262 3 50 1.1098839864312993 3 51 -0.835791381111072 3 52 -0.5478044802597211 3 53 -0.49036708105762017 3 54 0.06495830966419547 4 1 0.05082972157141441 4 2 0.528472618600496 4 3 -0.06998794044829992 4 4 0.9770198599354565 4 5 1.1004886730206387 4 6 0.1575876837002177 4 7 0.6801991302247039 4 8 0.5346652949210515 4 9 -0.2155224031438827 4 10 -0.29104528321919787 4 11 -0.7165054127458248 4 12 -1.561924404098317 4 13 -0.5241512508520181 4 14 -0.19168461546978222 4 15 -0.91487583175563 4 16 0.42144565579348026 4 17 0.7586956010741162 4 18 -0.26179237926040955 4 19 0.2449633089275025 4 20 0.5093017525242587 4 21 -0.3575355420368176 4 22 -1.5020651300958257 4 23 -0.19604692550984382 4 24 -0.008174888481793374 4 25 1.0917454327428722 4 26 0.7131846102178585 4 27 0.2493026240596592 4 28 0.9774245050204087 4 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1.604649899688269 10 31 1.8797673426317907 10 32 0.47690705997611715 10 33 -0.15584604937545876 10 34 1.8398773633300465 10 35 2.981199715317363 10 36 0.8110078355858406 10 37 1.8617452936378776 10 38 1.7742605987363014 10 39 3.2937897396720928 10 40 3.2918952034041524 10 41 1.3115749098869323 10 42 2.911702897841007 10 43 2.9292302270051636 10 44 1.964400342482186 10 45 0.5477757053971892 10 46 1.9135298205630704 10 47 1.2741568491184836 10 48 2.799334226444202 10 49 3.441999390209105 10 50 4.391043406721156 10 51 3.7815999232367545 10 52 1.3217607371315836 10 53 3.0125314696670173 10 54 2.2316249763308633 >>END_MODULE >>Per sequence quality scores warn #Quality Count 8 4.0 9 4.0 10 2.0 11 2.0 12 4.0 13 6.0 14 4.0 15 11.0 16 20.0 17 50.0 18 98.0 19 149.0 20 210.0 21 275.0 22 367.0 23 425.0 24 518.0 25 540.0 26 539.0 27 532.0 28 468.0 29 360.0 30 234.0 31 122.0 32 51.0 33 5.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 21.5 32.64 25.919999999999998 19.939999999999998 2 24.04 31.72 26.540000000000003 17.7 3 21.58 28.860000000000003 29.42 20.14 4 21.58 28.28 28.9 21.240000000000002 5 21.16 29.720000000000002 28.32 20.8 6 22.38 29.24 25.72 22.66 7 21.34 30.320000000000004 28.24 20.1 8 21.58 29.060000000000002 27.939999999999998 21.42 9 20.3 28.48 28.58 22.64 10 21.2 30.84 26.56 21.4 11 21.14 28.64 27.279999999999998 22.939999999999998 12 21.32 28.88 28.999999999999996 20.8 13 20.36 29.220000000000002 28.939999999999998 21.48 14 20.02 29.2 29.220000000000002 21.560000000000002 15 20.200000000000003 29.220000000000002 28.38 22.2 16 20.34 29.38 29.299999999999997 20.979999999999997 17 20.599999999999998 29.14 28.499999999999996 21.759999999999998 18 20.599999999999998 27.92 29.4 22.08 19 21.66 28.46 28.58 21.3 20 20.0 29.24 28.96 21.8 21 21.72 28.499999999999996 28.18 21.6 22 20.52 30.880000000000003 27.3 21.3 23 20.72 28.9 29.720000000000002 20.66 24 21.12 28.62 27.58 22.68 25 21.099999999999998 29.060000000000002 29.160000000000004 20.68 26 22.18887555022009 28.391356542617046 28.131252501000397 21.288515406162464 27 21.344268853770753 28.525705141028208 28.765753150630125 21.364272854570913 28 19.34 30.54 27.46 22.66 29 20.90418083616723 29.12582516503301 29.045809161832363 20.924184836967395 30 21.099999999999998 29.4 27.439999999999998 22.06 31 20.84 28.04 28.660000000000004 22.46 32 19.847939175670266 28.371348539415763 28.7515006002401 23.02921168467387 33 22.084416883376676 28.62572514502901 27.265453090618124 22.024404880976196 34 21.304260852170433 29.285857171434287 27.265453090618124 22.144428885777156 35 21.084216843368676 29.425885177035404 28.225645129025807 21.264252850570113 36 21.404280856171233 28.665733146629325 28.805761152230446 21.124224844968996 37 20.888355342136855 29.43177270908363 28.53141256502601 21.1484593837535 38 21.864372874574915 29.02580516103221 28.065613122624526 21.044208841768352 39 21.928771508603443 28.251300520208083 27.050820328131252 22.769107643057225 40 21.32 28.499999999999996 27.82 22.36 41 21.673003802281368 28.116870122073244 27.61656994196518 22.59355613368021 42 22.29337602561537 28.036822093255953 27.71662997798679 21.953171903141886 43 21.244248849769953 28.425685137027408 27.825565113022606 22.504500900180034 44 21.404280856171233 28.985797159431886 27.545509101820365 22.064412882576516 45 21.86 29.28 26.740000000000002 22.12 46 21.26 27.54 27.74 23.46 47 21.628651460584233 28.271308523409367 28.051220488195277 22.048819527811126 48 21.279999999999998 28.439999999999998 26.400000000000002 23.880000000000003 49 21.044208841768352 29.045809161832363 27.185437087417487 22.724544908981798 50 21.82873149259704 28.15126050420168 26.810724289715886 23.209283713485394 51 21.028411364545818 27.73109243697479 28.011204481792717 23.229291716686674 52 21.824364872974595 30.146029205841167 25.94518903780756 22.084416883376676 53 21.164232846569313 28.325665133026607 28.045609121824366 22.464492898579717 54 21.53907976692787 27.024311834438418 26.90375728350412 24.5328511151296 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3.0 1 5.0 2 7.0 3 7.0 4 7.0 5 5.0 6 2.0 7 1.0 8 1.5 9 2.0 10 1.5 11 1.0 12 2.5 13 4.0 14 4.0 15 4.0 16 5.0 17 6.0 18 11.0 19 19.5 20 23.0 21 37.5 22 52.0 23 61.0 24 70.0 25 79.0 26 88.0 27 117.5 28 147.0 29 159.5 30 172.0 31 203.0 32 243.0 33 252.0 34 290.0 35 328.0 36 330.0 37 332.0 38 332.5 39 333.0 40 342.0 41 351.0 42 343.5 43 336.0 44 318.5 45 279.5 46 258.0 47 254.5 48 251.0 49 234.5 50 218.0 51 209.5 52 201.0 53 198.5 54 196.0 55 177.0 56 162.5 57 167.0 58 147.0 59 127.0 60 106.5 61 86.0 62 85.0 63 84.0 64 61.5 65 39.0 66 42.5 67 46.0 68 34.0 69 17.0 70 12.0 71 14.0 72 16.0 73 12.5 74 9.0 75 6.5 76 4.0 77 4.5 78 5.0 79 5.0 80 5.0 81 3.0 82 1.0 83 1.0 84 1.0 85 1.0 86 1.0 87 1.0 88 1.0 89 1.0 90 2.0 91 3.0 92 2.5 93 2.0 94 2.0 95 3.0 96 4.0 97 5.0 98 6.0 99 3.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.04 27 0.02 28 0.0 29 0.02 30 0.0 31 0.0 32 0.04 33 0.02 34 0.02 35 0.02 36 0.02 37 0.04 38 0.02 39 0.04 40 0.0 41 0.06 42 0.06 43 0.02 44 0.02 45 0.0 46 0.0 47 0.04 48 0.0 49 0.02 50 0.04 51 0.04 52 0.02 53 0.02 54 0.45999999999999996 >>END_MODULE >>Sequence Length Distribution pass #Length Count 54 5000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 99.52 #Duplication Level Percentage of deduplicated Percentage of total 1 99.81913183279742 99.33999999999999 2 0.08038585209003216 0.16 3 0.04019292604501608 0.12 4 0.0 0.0 5 0.02009646302250804 0.1 6 0.0 0.0 7 0.04019292604501608 0.27999999999999997 8 0.0 0.0 9 0.0 0.0 >10 0.0 0.0 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGGAAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT 7 0.13999999999999999 Illumina Paired End PCR Primer 2 (96% over 33bp) CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC 7 0.13999999999999999 Illumina Paired End PCR Primer 2 (100% over 35bp) >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2 0.02 0.0 0.0 0.0 3 0.02 0.0 0.0 0.0 4 0.02 0.0 0.0 0.0 5 0.02 0.0 0.0 0.0 6 0.02 0.0 0.0 0.0 7 0.02 0.0 0.0 0.0 8 0.02 0.0 0.0 0.0 9 0.02 0.0 0.0 0.0 10 0.02 0.0 0.0 0.0 11 0.02 0.0 0.0 0.0 12 0.02 0.0 0.0 0.0 13 0.02 0.0 0.0 0.0 14 0.02 0.0 0.0 0.0 15 0.02 0.0 0.0 0.0 16 0.02 0.0 0.0 0.0 17 0.02 0.0 0.0 0.0 18 0.02 0.0 0.0 0.0 19 0.06 0.0 0.0 0.0 20 0.36 0.0 0.0 0.0 21 0.36 0.0 0.0 0.0 22 0.36 0.0 0.0 0.0 23 0.36 0.0 0.0 0.0 24 0.36 0.0 0.0 0.0 25 0.4 0.0 0.0 0.0 26 0.4 0.0 0.0 0.0 27 0.42 0.0 0.0 0.0 28 0.62 0.0 0.0 0.0 29 0.66 0.0 0.0 0.0 30 0.68 0.0 0.0 0.0 31 0.68 0.0 0.0 0.0 32 0.68 0.0 0.0 0.0 33 0.68 0.0 0.0 0.0 34 0.7 0.0 0.0 0.0 35 0.76 0.0 0.0 0.0 36 0.8 0.0 0.0 0.0 37 0.88 0.0 0.0 0.0 38 1.0 0.0 0.0 0.0 39 1.12 0.0 0.0 0.0 40 1.22 0.0 0.0 0.0 41 1.38 0.0 0.0 0.0 42 1.48 0.0 0.0 0.0 >>END_MODULE >>Kmer Content pass >>END_MODULE