Mercurial > repos > devteam > freebayes

annotate test-data/phiX.fasta @ 6:fcb60273c710

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Add version string to samtools requirement
author Daniel Blankenberg <dan@bx.psu.edu>
date Fri, 24 Aug 2012 16:03:20 -0400
parents e54bb199a47b
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
4
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
1 >phiX174
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
2 GAGTTTTATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAGTCGAAAAATTATCTT
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
3 GATAAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGGAAAATGAGAAA
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
4 ATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCGCCATCAACTAACGATTCTG
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
5 TCAAAAACTGACGCGTTGGATGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTA
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
6 GATATGAGTCACATTTTGTTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTATC
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
7 TGAGTCCGATGCTGTTCAACCACTAATAGGTAAGAAATCATGAGTCAAGTTACTGAACAATCCGTACGTT
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
8 TCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTT
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
9 CGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCT
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
10 TGCGTTTATGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
11 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTAC
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
12 GGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTA
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
13 CGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGGAG
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
14 TGATGTAATGTCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACT
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
15 AAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGC
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
16 CCCTTACTTGAGGATAAATTATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCA
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
17 TCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGAC
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
18 TCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTA
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
19 CTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAA
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
20 GGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAACACTACTGGTTATATTGACCATGCCGCTTTTCTT
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
21 GGCACGATTAACCCTGATACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACA
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
22 ACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTAATCAAGATGATGC
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
23 TCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTT
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
24 TCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGC
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
25 ATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCGTGATGTTATTTCTTCATTTGGAGGTAAAAC
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
26 CTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTT
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
27 GATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGC
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
28 CGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGAC
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
29 TAAAGAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTG
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
30 TATGGCAACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGT
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
31 TTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTTTCTCCTGCTTATCACCTTCTTGA
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
32 AGGCTTCCCATTCATTCAGGAACCGCCTTCTGGTGATTTGCAAGAACGCGTACTTATTCGCCACCATGAT
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
33 TATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTT
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
34 ATCGCAATCTGCCGACCACTCGCGATTCAATCATGACTTCGTGATAAAAGATTGAGTGTGAGGTTATAAC
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
35 GCCGAAGCGGTAAAAATTTTAATTTTTGCCGCTGAGGGGTTGACCAAGCGAAGCGCGGTAGGTTTTCTGC
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
36 TTAGGAGTTTAATCATGTTTCAGACTTTTATTTCTCGCCATAATTCAAACTTTTTTTCTGATAAGCTGGT
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
37 TCTCACTTCTGTTACTCCAGCTTCTTCGGCACCTGTTTTACAGACACCTAAAGCTACATCGTCAACGTTA
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
38 TATTTTGATAGTTTGACGGTTAATGCTGGTAATGGTGGTTTTCTTCATTGCATTCAGATGGATACATCTG
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
39 TCAACGCCGCTAATCAGGTTGTTTCTGTTGGTGCTGATATTGCTTTTGATGCCGACCCTAAATTTTTTGC
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
40 CTGTTTGGTTCGCTTTGAGTCTTCTTCGGTTCCGACTACCCTCCCGACTGCCTATGATGTTTATCCTTTG
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
41 AATGGTCGCCATGATGGTGGTTATTATACCGTCAAGGACTGTGTGACTATTGACGTCCTTCCCCGTACGC
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
42 CGGGCAATAATGTTTATGTTGGTTTCATGGTTTGGTCTAACTTTACCGCTACTAAATGCCGCGGATTGGT
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
43 TTCGCTGAATCAGGTTATTAAAGAGATTATTTGTCTCCAGCCACTTAAGTGAGGTGATTTATGTTTGGTG
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
44 CTATTGCTGGCGGTATTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAAATTGTTTGGAGGCGGTCAAAA
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
45 AGCCGCCTCCGGTGGCATTCAAGGTGATGTGCTTGCTACCGATAACAATACTGTAGGCATGGGTGATGCT
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
46 GGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTAACCCTGATGAGGCCGCCCCTAGTTTTGTTTCTG
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
47 GTGCTATGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTTCTGCCGTTTCTGA
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
48 TAAGTTGCTTGATTTGGTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTAT
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
49 CTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGG
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
50 TTGACGCCGGATTTGAGAATCAAAAAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGA
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
51 GATGCAAAATGAGACTCAAAAAGAGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGAC
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
52 CAGGTATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTATTA
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
53 TGGAAAACACCAATCTTTCCAAGCAACAGCAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCA
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
54 AACGGCTGGTCAGTATTTTACCAATGACCAAATCAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGAC
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
55 TTAGTTCATCAGCAAACGCAGAATCAGCGGTATGGCTCTTCTCATATTGGCGCTACTGCAAAGGATATTT
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
56 CTAATGTCGTCACTGATGCTGCTTCTGGTGTGGTTGATATTTTTCATGGTATTGATAAAGCTGTTGCCGA
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
57 TACTTGGAACAATTTCTGGAAAGACGGTAAAGCTGATGGTATTGGCTCTAATTTGTCTAGGAAATAACCG
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
58 TCAGGATTGACACCCTCCCAATTGTATGTTTTCATGCCTCCAAATCTTGGAGGCTTTTTTATGGTTCGTT
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
59 CTTATTACCCTTCTGAATGTCACGCTGATTATTTTGACTTTGAGCGTATCGAGGCTCTTAAACCTGCTAT
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
60 TGAGGCTTGTGGCATTTCTACTCTTTCTCAATCCCCAATGCTTGGCTTCCATAAGCAGATGGATAACCGC
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
61 ATCAAGCTCTTGGAAGAGATTCTGTCTTTTCGTATGCAGGGCGTTGAGTTCGATAATGGTGATATGTATG
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
62 TTGACGGCCATAAGGCTGCTTCTGACGTTCGTGATGAGTTTGTATCTGTTACTGAGAAGTTAATGGATGA
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
63 ATTGGCACAATGCTACAATGTGCTCCCCCAACTTGATATTAATAACACTATAGACCACCGCCCCGAAGGG
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
64 GACGAAAAATGGTTTTTAGAGAACGAGAAGACGGTTACGCAGTTTTGCCGCAAGCTGGCTGCTGAACGCC
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
65 CTCTTAAGGATATTCGCGATGAGTATAATTACCCCAAAAAGAAAGGTATTAAGGATGAGTGTTCAAGATT
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
66 GCTGGAGGCCTCCACTATGAAATCGCGTAGAGGCTTTACTATTCAGCGTTTGATGAATGCAATGCGACAG
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
67 GCTCATGCTGATGGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTT
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
68 ATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCCGAGGGTCG
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
69 CAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAGTATGGTACAGCTAATGGC
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
70 CGTCTTCATTTCCATGCGGTGCATTTTATGCGGACACTTCCTACAGGTAGCGTTGACCCTAATTTTGGTC
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
71 GTCGGGTACGCAATCGCCGCCAGTTAAATAGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCAT
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
72 CGCAGTTCGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAG
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
73 CCGCTTAAAGCTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTAAATACGTTAACAAAAAGTCAGATA
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
74 TGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAATGGAACAACTCACTAAAAACCAAGCTGTCGCTACT
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
75 TCCCAAGAAGCTGTTCAGAATCAGAATGAGCCGCAACTTCGGGATGAAAATGCTCACAATGACAAATCTG
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
76 TCCACGGAGTGCTTAATCCAACTTACCAAGCTGGGTTACGACGCGACGCCGTTCAACCAGATATTGAAGC
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
77 AGAACGCAAAAAGAGAGATGAGATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAACC
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
78 TGTGACGACAAATCTGCTCAAATTTATGCGCGCTTCGATAAAAATGATTGGCGTATCCAACCTGCA
e54bb199a47b Fixed git revision string in tool_dependencies.xml and added functional test data
greg <greg@bx.psu.edu>
parents:
diff changeset
79