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comparison tool_dependencies.xml @ 8:28e422c589ac

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Fix for FreeBayes tool dependency git checkout commands. Credit goes to Lance Parsons.
author Daniel Blankenberg <dan@bx.psu.edu>
date Wed, 12 Sep 2012 13:06:51 -0400
parents d3bf1e86b243
children d291dc763c4c
comparison
equal deleted inserted replaced
7:d3bf1e86b243 8:28e422c589ac
2 <tool_dependency> 2 <tool_dependency>
3 <package name="freebayes" version="0.9.6_9608597d12e127c847ae03aa03440ab63992fedf"> 3 <package name="freebayes" version="0.9.6_9608597d12e127c847ae03aa03440ab63992fedf">
4 <install version="1.0"> 4 <install version="1.0">
5 <actions> 5 <actions>
6 <action type="shell_command">git clone --recursive git://github.com/ekg/freebayes.git</action> 6 <action type="shell_command">git clone --recursive git://github.com/ekg/freebayes.git</action>
7 <action type="shell_command">git reset --hard 9608597d12e127c847ae03aa03440ab63992fedf</action> 7 <action type="shell_command">git checkout 9608597d12e127c847ae03aa03440ab63992fedf</action>
8 <action type="shell_command">git submodule update --recursive</action>
8 <action type="shell_command">make</action> 9 <action type="shell_command">make</action>
9 <action type="move_directory_files"> 10 <action type="move_directory_files">
10 <source_directory>bin</source_directory> 11 <source_directory>bin</source_directory>
11 <destination_directory>$INSTALL_DIR/bin</destination_directory> 12 <destination_directory>$INSTALL_DIR/bin</destination_directory>
12 </action> 13 </action>