Mercurial > repos > devteam > freebayes

comparison test-data/freebayes-phix174-test3.vcf @ 32:8a7a42541080 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/freebayes commit cce7fcdd5e8ba8636c751f9f974bf07a6845ba1c"
author iuc
date Wed, 01 Dec 2021 21:50:06 +0000
parents ef2c525bd8cd
children
comparison
equal deleted inserted replaced
31:57def2d7c093 32:8a7a42541080
1 ##fileformat=VCFv4.2 1 ##fileformat=VCFv4.2
2 ##fileDate=20191031 2 ##fileDate=20191031
3 ##source=freeBayes v1.3.1-dirty 3 ##source=freeBayes v1.3.5
4 ##reference=localref.fa 4 ##reference=localref.fa
5 ##contig=<ID=phiX174,length=5386> 5 ##contig=<ID=phiX174,length=5386>
6 ##phasing=none 6 ##phasing=none
7 ##commandline="freebayes --region phiX174:0..5386 --bam b_0.bam --fasta-reference localref.fa --vcf ./vcf_output/part_phiX174:0..5386.vcf --min-coverage 14 --skip-coverage 0 --limit-coverage 0 --haplotype-length 0 --min-alternate-count 1 --min-alternate-fraction 0.05 --pooled-continuous --report-monomorphic --standard-filters" 7 ##commandline="freebayes --region phiX174:0..5386 --bam b_0.bam --fasta-reference localref.fa --vcf ./vcf_output/part_phiX174:0..5386.vcf --min-coverage 14 --skip-coverage 0 --limit-coverage 0 --haplotype-length 0 --min-alternate-count 1 --min-alternate-fraction 0.05 --pooled-continuous --report-monomorphic --standard-filters"
8 ##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of samples with data"> 8 ##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of samples with data">