Mercurial > repos > devteam > freebayes

comparison macros.xml @ 27:9f164587a92f draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/freebayes commit d2f9b1728a6525b599e2c014a183b0415b27a870
author iuc
date Tue, 06 Jun 2017 11:44:38 -0400
parents bf27106652f3
children 977a5301b66d
comparison
equal deleted inserted replaced
26:a028d13cd860 27:9f164587a92f
1 <macros> 1 <macros>
2 <token name="@DEPENDENCY_VERSION@">1.0.2.29</token> 2 <token name="@DEPENDENCY_VERSION@">1.1.0</token>
3 3
4 <xml name="citations"> 4 <xml name="citations">
5 <citations> 5 <citations>
6 <citation type="bibtex"> 6 <citation type="bibtex">
7 @misc{1207.3907, 7 @misc{1207.3907,
8 Author = {Erik Garrison}, 8 Author = {Erik Garrison},
9 Title = {Haplotype-based variant detection from short-read sequencing}, 9 Title = {Haplotype-based variant detection from short-read sequencing},
10 Year = {2012}, 10 Year = {2012},
11 Eprint = {arXiv:1207.3907}, 11 Eprint = {arXiv:1207.3907},
12 url = {http://arxiv.org/abs/1207.3907} 12 url = {http://arxiv.org/abs/1207.3907}
13 } 13 }
14 </citation> 14 </citation>
15 </citations> 15 </citations>
16 </xml> 16 </xml>
17 17 <xml name="validation">
18 <validator type="unspecified_build" />
19 <validator type="dataset_metadata_in_data_table" table_name="fasta_indexes" metadata_name="dbkey" metadata_column="1" message="Sequences are not currently available for the specified build." />
20 </xml>
21 <xml name="input_bam">
22 <conditional name="batchmode">
23 <param name="processmode" type="select" label="Run in batch mode?" help="Selecting individual mode will generate one VCF file for each input BAM file. Selecting the merge option will produce one VCF file for all input BAM files." display="radio">
24 <option value="individual" selected="True">Run individually</option>
25 <option value="merge">Merge output VCFs</option>
26 </param>
27 <when value="individual">
28 <param name="input_bams" type="data" format="bam" label="BAM file">
29 <yield />
30 </param>
31 </when>
32 <when value="merge">
33 <param name="input_bams" type="data" format="bam" multiple="True" label="BAM file">
34 <yield />
35 </param>
36 </when>
37 </conditional>
38 </xml>
18 <xml name="par_min_cov"> 39 <xml name="par_min_cov">
19 <param name="min_coverage" type="integer" value="0" label="Require at least this coverage to process a site" 40 <param name="min_coverage" type="integer" value="0" label="Require at least this coverage to process a site"
20 help="default=0" argument="--coverage" /> 41 help="default=0" argument="--coverage" />
21 </xml> 42 </xml>
22 </macros> 43 </macros>