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comparison tool_dependencies.xml @ 7:d3bf1e86b243

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Make samtools sed command gnu compatible.
author Daniel Blankenberg <dan@bx.psu.edu>
date Wed, 29 Aug 2012 11:46:04 -0400
parents 949ac66308a7
children 28e422c589ac
comparison
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6:fcb60273c710 7:d3bf1e86b243
22 </package> 22 </package>
23 <package name="samtools" version="0.1.18"> 23 <package name="samtools" version="0.1.18">
24 <install version="1.0"> 24 <install version="1.0">
25 <actions> 25 <actions>
26 <action type="download_by_url">http://sourceforge.net/projects/samtools/files/samtools/0.1.18/samtools-0.1.18.tar.bz2</action> 26 <action type="download_by_url">http://sourceforge.net/projects/samtools/files/samtools/0.1.18/samtools-0.1.18.tar.bz2</action>
27 <action type="shell_command">sed -i .bak -e 's/-lcurses/-lncurses/g' Makefile</action> 27 <action type="shell_command">sed -i.bak -e 's/-lcurses/-lncurses/g' Makefile</action>
28 <action type="shell_command">make</action> 28 <action type="shell_command">make</action>
29 <action type="move_file"> 29 <action type="move_file">
30 <source>samtools</source> 30 <source>samtools</source>
31 <destination>$INSTALL_DIR/bin</destination> 31 <destination>$INSTALL_DIR/bin</destination>
32 </action> 32 </action>