Mercurial > repos > devteam > freebayes
comparison tool_dependencies.xml @ 7:d3bf1e86b243
Make samtools sed command gnu compatible.
author | Daniel Blankenberg <dan@bx.psu.edu> |
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date | Wed, 29 Aug 2012 11:46:04 -0400 |
parents | 949ac66308a7 |
children | 28e422c589ac |
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6:fcb60273c710 | 7:d3bf1e86b243 |
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22 </package> | 22 </package> |
23 <package name="samtools" version="0.1.18"> | 23 <package name="samtools" version="0.1.18"> |
24 <install version="1.0"> | 24 <install version="1.0"> |
25 <actions> | 25 <actions> |
26 <action type="download_by_url">http://sourceforge.net/projects/samtools/files/samtools/0.1.18/samtools-0.1.18.tar.bz2</action> | 26 <action type="download_by_url">http://sourceforge.net/projects/samtools/files/samtools/0.1.18/samtools-0.1.18.tar.bz2</action> |
27 <action type="shell_command">sed -i .bak -e 's/-lcurses/-lncurses/g' Makefile</action> | 27 <action type="shell_command">sed -i.bak -e 's/-lcurses/-lncurses/g' Makefile</action> |
28 <action type="shell_command">make</action> | 28 <action type="shell_command">make</action> |
29 <action type="move_file"> | 29 <action type="move_file"> |
30 <source>samtools</source> | 30 <source>samtools</source> |
31 <destination>$INSTALL_DIR/bin</destination> | 31 <destination>$INSTALL_DIR/bin</destination> |
32 </action> | 32 </action> |