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view test-data/freebayes_out_1.output_trace @ 11:e9ebed0c12f6 draft

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Check exit code instead of stderr, since FreeBayes writes warnings there (e.g. "Could not find any mapped reads in target region chr1:955302..955952"). Also document change of available options in FreeBayes >= 0.9.9.
author soranzo
date Mon, 17 Feb 2014 10:53:56 -0500
parents e54bb199a47b
children
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phiX174,1411,allele,phiX174,phiX174,A,60,100
phiX174,1412,allele,phiX174,phiX174,G,60,100
phiX174,1413,allele,phiX174,phiX174,C,60,100
phiX174,1414,allele,phiX174,phiX174,G,60,100
phiX174,1415,allele,phiX174,phiX174,C,60,100
phiX174,1416,allele,phiX174,phiX174,C,60,100
phiX174,1417,allele,phiX174,phiX174,G,60,100
phiX174,1418,allele,phiX174,phiX174,T,60,100