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view tool_data_table_conf.xml.sample @ 11:e9ebed0c12f6 draft

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Check exit code instead of stderr, since FreeBayes writes warnings there (e.g. "Could not find any mapped reads in target region chr1:955302..955952"). Also document change of available options in FreeBayes >= 0.9.9.
author soranzo
date Mon, 17 Feb 2014 10:53:56 -0500
parents 61fe907fc37c
children
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<!-- Use the file tool_data_table_conf.xml.oldlocstyle if you don't want to update your loc files as changed in revision 4550:535d276c92bc-->
<tables>
    <!-- Location of SAMTools indexes and other files -->
    <table name="sam_fa_indexes" comment_char="#">
        <columns>line_type, value, path</columns>
        <file path="tool-data/sam_fa_indices.loc" />
    </table>
</tables>