freebayes: revision graph

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Check exit code instead of stderr, since FreeBayes writes warnings there (e.g. "Could not find any mapped reads in target region chr1:955302..955952"). Also document change of available options in FreeBayes >= 0.9.9. draft
Mon, 17 Feb 2014 10:53:56 -0500, by soranzo
Uploaded updated tool dependency definition. draft
Mon, 16 Dec 2013 16:31:57 -0500, by devteam
Add an optional alternative make route for compiling FreeBayes; solves issues seen installing under certain architectures.
Wed, 05 Jun 2013 15:00:03 -0400, by Daniel Blankenberg
Fix for FreeBayes tool dependency git checkout commands. Credit goes to Lance Parsons.
Wed, 12 Sep 2012 13:06:51 -0400, by Daniel Blankenberg
Make samtools sed command gnu compatible.
Wed, 29 Aug 2012 11:46:04 -0400, by Daniel Blankenberg
Add version string to samtools requirement
Fri, 24 Aug 2012 16:03:20 -0400, by Daniel Blankenberg
Update FreeBayes to 0.9.6_9608597d12e127c847ae03aa03440ab63992fedf.
Fri, 24 Aug 2012 16:00:21 -0400, by Daniel Blankenberg
Fixed git revision string in tool_dependencies.xml and added functional test data
Wed, 15 Aug 2012 10:43:46 -0400, by greg

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