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annotate test-data/Homo_sapiens.GRCh37_19.71.bed @ 9:3e436657dcd0 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit 0d019235fcfc835b99d5651b0bc4fd0da06707ac
author iuc
date Fri, 15 Dec 2023 19:39:24 +0000
parents 154d00cbbf2d
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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154d00cbbf2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit f40643d8b80299ebb84faebe92579321ac459746"
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1 19 223157 223261 ENST00000410397 100 - 223157 223261 0,0,0 1 104, 0, geneID=ENSG00000222329;gene_name=U6
154d00cbbf2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit f40643d8b80299ebb84faebe92579321ac459746"
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2 19 229639 230165 ENST00000587910 100 - 229639 230165 0,0,0 2 70,82, 0,444, geneID=ENSG00000267600;gene_name=AC098474.1
154d00cbbf2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit f40643d8b80299ebb84faebe92579321ac459746"
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3 19 239144 239247 ENST00000588755 100 - 239144 239247 0,0,0 1 103, 0, geneID=ENSG00000267305;gene_name=CTD-3113P16.7
154d00cbbf2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit f40643d8b80299ebb84faebe92579321ac459746"
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4 19 279494 280170 ENST00000589981 100 + 279494 280170 0,0,0 1 676, 0, geneID=ENSG00000267447;gene_name=VN2R11P
154d00cbbf2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit f40643d8b80299ebb84faebe92579321ac459746"
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5 19 281042 291386 ENST00000269812 100 - 281387 291336 0,0,0 6 495,177,58,278,152,102, 0,1091,1709,6431,6977,10242, CDS=281387:291336;CDSphase=0;geneID=ENSG00000141934;gene_name=PPAP2C
154d00cbbf2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit f40643d8b80299ebb84faebe92579321ac459746"
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6 19 281344 291393 ENST00000434325 100 - 281387 288055 0,0,0 6 193,177,58,278,152,68, 0,789,1407,6129,6675,9981, CDS=281387:288055;CDSphase=0;geneID=ENSG00000141934;gene_name=PPAP2C
154d00cbbf2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit f40643d8b80299ebb84faebe92579321ac459746"
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7 19 281387 291200 ENST00000327790 100 - 281387 291066 0,0,0 6 150,177,58,278,152,249, 0,746,1364,6086,6632,9564, CDS=281387:291066;CDSphase=0;geneID=ENSG00000141934;gene_name=PPAP2C
154d00cbbf2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit f40643d8b80299ebb84faebe92579321ac459746"
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8 19 281990 287636 ENST00000586998 100 - 282121 287636 2,0,0 3 320,58,163, 0,761,5483, CDS=282121:287636;CDSphase=2;geneID=ENSG00000141934;gene_name=PPAP2C
154d00cbbf2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit f40643d8b80299ebb84faebe92579321ac459746"
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9 19 287160 288530 ENST00000589672 100 - 287160 288530 0,0,0 2 591,511, 0,859, geneID=ENSG00000141934;gene_name=PPAP2C
154d00cbbf2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit f40643d8b80299ebb84faebe92579321ac459746"
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10 19 287473 291382 ENST00000591572 100 - 287473 291336 0,0,0 3 278,170,98, 0,546,3811, CDS=287473:291336;CDSphase=0;geneID=ENSG00000141934;gene_name=PPAP2C
154d00cbbf2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit f40643d8b80299ebb84faebe92579321ac459746"
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11 19 305572 306467 ENST00000591533 100 + 305572 306467 0,0,0 2 131,411, 0,484, geneID=ENSG00000267124;gene_name=CTD-3113P16.5
154d00cbbf2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit f40643d8b80299ebb84faebe92579321ac459746"
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12 19 305574 344793 ENST00000264819 100 - 306689 344782 0,0,0 14 1137,418,89,125,95,82,152,70,92,124,126,143,91,20, 0,1544,3002,3226,6270,6616,7917,20060,20932,21558,22289,28825,30508,39199, CDS=306689:344782;CDSphase=0;geneID=ENSG00000105556;gene_name=MIER2
154d00cbbf2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit f40643d8b80299ebb84faebe92579321ac459746"
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13 19 305578 325706 ENST00000589092 100 + 305578 325706 0,0,0 2 356,83, 0,20045, geneID=ENSG00000267124;gene_name=CTD-3113P16.5
154d00cbbf2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit f40643d8b80299ebb84faebe92579321ac459746"
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14 19 326606 336178 ENST00000586994 100 - 326606 336178 0,0,0 4 650,126,143,96, 0,1257,7793,9476, geneID=ENSG00000105556;gene_name=MIER2
154d00cbbf2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit f40643d8b80299ebb84faebe92579321ac459746"
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15 19 327863 340599 ENST00000592722 100 - 327863 340599 0,0,0 5 126,117,143,91,86, 0,2400,6536,8219,12650, geneID=ENSG00000105556;gene_name=MIER2
154d00cbbf2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit f40643d8b80299ebb84faebe92579321ac459746"
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16 19 334114 344798 ENST00000587966 100 - 334114 344798 0,0,0 2 428,25, 0,10659, geneID=ENSG00000105556;gene_name=MIER2
154d00cbbf2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit f40643d8b80299ebb84faebe92579321ac459746"
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17 19 361749 376013 ENST00000342640 100 - 362199 375970 0,0,0 8 677,160,118,70,62,72,123,351, 0,5315,9455,10881,11720,12190,12549,13913, CDS=362199:375970;CDSphase=0;geneID=ENSG00000105549;gene_name=THEG
154d00cbbf2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit f40643d8b80299ebb84faebe92579321ac459746"
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18 19 362057 374620 ENST00000530711 100 - 362057 374620 0,0,0 3 369,160,322, 0,5007,12241, geneID=ENSG00000105549;gene_name=THEG
154d00cbbf2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit f40643d8b80299ebb84faebe92579321ac459746"
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19 19 362199 375970 ENST00000346878 100 - 362199 375970 0,0,0 7 227,160,118,70,62,123,308, 0,4865,9005,10431,11270,12099,13463, CDS=362199:375970;CDSphase=0;geneID=ENSG00000105549;gene_name=THEG
154d00cbbf2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit f40643d8b80299ebb84faebe92579321ac459746"
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20 19 367201 374249 ENST00000528213 100 - 367201 374249 0,0,0 5 23,118,70,62,310, 0,4003,5429,6268,6738, geneID=ENSG00000105549;gene_name=THEG
154d00cbbf2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit f40643d8b80299ebb84faebe92579321ac459746"
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21 19 397588 398941 ENST00000591757 100 + 397588 398941 0,0,0 2 45,252, 0,1101, geneID=ENSG00000267443;gene_name=AC010641.1
154d00cbbf2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit f40643d8b80299ebb84faebe92579321ac459746"
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22 19 405444 409139 ENST00000332235 100 - 407095 408361 0,0,0 2 2957,134, 0,3561, CDS=407095:408361;CDSphase=0;geneID=ENSG00000183186;gene_name=C2CD4C
154d00cbbf2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit f40643d8b80299ebb84faebe92579321ac459746"
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23 19 416582 419879 ENST00000587423 100 - 416582 419879 0,0,0 2 740,957, 0,2340, geneID=ENSG00000129946;gene_name=SHC2
154d00cbbf2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit f40643d8b80299ebb84faebe92579321ac459746"
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24 19 416582 422828 ENST00000588376 100 - 416582 422828 0,0,0 3 740,134,683, 0,2340,5563, geneID=ENSG00000129946;gene_name=SHC2
154d00cbbf2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit f40643d8b80299ebb84faebe92579321ac459746"
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25 19 416592 460996 ENST00000264554 100 - 418927 460996 0,0,0 13 730,134,311,135,64,157,127,52,54,120,61,71,468, 0,2330,5553,8504,14091,18116,19572,19787,20037,22125,22377,24269,43936, CDS=418927:460996;CDSphase=0;geneID=ENSG00000129946;gene_name=SHC2
154d00cbbf2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit f40643d8b80299ebb84faebe92579321ac459746"
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26 19 416608 441384 ENST00000589922 100 - 416608 441384 0,0,0 11 714,134,311,135,64,157,127,304,120,61,523, 0,2314,5537,8488,14075,18100,19556,19771,22109,22361,24253, geneID=ENSG00000129946;gene_name=SHC2
154d00cbbf2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit f40643d8b80299ebb84faebe92579321ac459746"
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27 19 417199 436258 ENST00000590170 100 - 434761 436258 0,0,0 6 123,134,234,64,157,94, 0,1723,4946,13484,17509,18965, CDS=434761:436258;CDSphase=0;geneID=ENSG00000129946;gene_name=SHC2
154d00cbbf2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit f40643d8b80299ebb84faebe92579321ac459746"
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28 19 417199 436258 ENST00000591948 100 - 417199 436258 0,0,0 6 123,134,234,64,157,94, 0,1723,4946,13484,17509,18965, geneID=ENSG00000129946;gene_name=SHC2
154d00cbbf2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit f40643d8b80299ebb84faebe92579321ac459746"
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29 19 434701 460571 ENST00000590222 100 - 439397 460571 1,0,0 9 164,127,52,54,120,61,259,71,43, 0,1463,1678,1928,4016,4268,4531,6160,25827, CDS=439397:460571;CDSphase=1;geneID=ENSG00000129946;gene_name=SHC2
154d00cbbf2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit f40643d8b80299ebb84faebe92579321ac459746"
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30 19 435770 436534 ENST00000591388 100 - 435770 436534 0,0,0 3 191,127,155, 0,394,609, geneID=ENSG00000129946;gene_name=SHC2
154d00cbbf2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit f40643d8b80299ebb84faebe92579321ac459746"
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31 19 435778 439031 ENST00000590113 100 - 435778 439031 0,0,0 6 183,127,52,54,120,62, 0,386,601,851,2939,3191, geneID=ENSG00000129946;gene_name=SHC2
154d00cbbf2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit f40643d8b80299ebb84faebe92579321ac459746"
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32 19 453133 453245 ENST00000516730 100 + 453133 453245 0,0,0 1 112, 0, geneID=ENSG00000252539;gene_name=RNA5SP462
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33 19 463345 474983 ENST00000315489 100 - 463843 474747 0,0,0 4 1019,114,108,363, 0,4303,9048,11275, CDS=463843:474747;CDSphase=0;geneID=ENSG00000181781;gene_name=ODF3L2
154d00cbbf2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit f40643d8b80299ebb84faebe92579321ac459746"
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34 19 463466 474880 ENST00000382696 100 - 463843 474747 0,0,0 3 898,114,260, 0,4182,11154, CDS=463843:474747;CDSphase=0;geneID=ENSG00000181781;gene_name=ODF3L2
154d00cbbf2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit f40643d8b80299ebb84faebe92579321ac459746"
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35 19 464145 472631 ENST00000591681 100 - 464145 472631 0,0,0 3 219,114,238, 0,3503,8248, geneID=ENSG00000181781;gene_name=ODF3L2
154d00cbbf2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit f40643d8b80299ebb84faebe92579321ac459746"
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36 19 489175 505342 ENST00000587541 100 + 489175 505342 0,0,0 3 864,261,598, 0,12493,15569, geneID=ENSG00000099866;gene_name=MADCAM1
154d00cbbf2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit f40643d8b80299ebb84faebe92579321ac459746"
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37 19 490045 507813 ENST00000592413 100 - 490045 507813 0,0,0 3 308,84,438, 0,11495,17330, geneID=ENSG00000266933;gene_name=AC005775.2
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38 19 496453 505207 ENST00000346144 100 + 496499 504965 0,0,0 4 98,285,330,463, 0,1379,2042,8291, CDS=496499:504965;CDSphase=0;geneID=ENSG00000099866;gene_name=MADCAM1
154d00cbbf2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit f40643d8b80299ebb84faebe92579321ac459746"
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39 19 496453 505347 ENST00000215637 100 + 496499 504965 0,0,0 5 98,285,330,261,603, 0,1379,2042,5215,8291, CDS=496499:504965;CDSphase=0;geneID=ENSG00000099866;gene_name=MADCAM1
154d00cbbf2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit f40643d8b80299ebb84faebe92579321ac459746"
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40 19 496499 504965 ENST00000382683 100 + 496499 504965 0,0,0 3 52,330,221, 0,1996,8245, CDS=496499:504965;CDSphase=0;geneID=ENSG00000099866;gene_name=MADCAM1
154d00cbbf2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit f40643d8b80299ebb84faebe92579321ac459746"
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41 19 507298 519654 ENST00000359315 100 + 507506 519423 0,0,0 2 546,766, 0,11590, CDS=507506:519423;CDSphase=0;geneID=ENSG00000141933;gene_name=TPGS1
154d00cbbf2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit f40643d8b80299ebb84faebe92579321ac459746"
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42 19 507499 510372 ENST00000588278 100 + 507499 510372 0,0,0 1 2873, 0, geneID=ENSG00000141933;gene_name=TPGS1