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annotate test-data/Homo_sapiens.GRCh37_19.71.gff3 @ 9:3e436657dcd0 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit 0d019235fcfc835b99d5651b0bc4fd0da06707ac
author iuc
date Fri, 15 Dec 2023 19:39:24 +0000
parents 154d00cbbf2d
children
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5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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1 ##gff-version 3
8
154d00cbbf2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit f40643d8b80299ebb84faebe92579321ac459746"
iuc
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2 # gffread v0.12.7
154d00cbbf2d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit f40643d8b80299ebb84faebe92579321ac459746"
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3 # gffread /tmp/tmpk_iy6dhb/files/e/1/9/dataset_e191f2e3-7ad2-452e-b21c-edd22b6ba6e2.dat -o output.gff
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4 19 snRNA transcript 223158 223261 . - . ID=ENST00000410397;geneID=ENSG00000222329;gene_name=U6
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5 19 snRNA exon 223158 223261 . - . Parent=ENST00000410397
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6 19 unprocessed_pseudogene transcript 229640 230165 . - . ID=ENST00000587910;geneID=ENSG00000267600;gene_name=AC098474.1
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7 19 unprocessed_pseudogene exon 229640 229709 . - . Parent=ENST00000587910
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8 19 unprocessed_pseudogene exon 230084 230165 . - . Parent=ENST00000587910
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9 19 processed_pseudogene transcript 239145 239247 . - . ID=ENST00000588755;geneID=ENSG00000267305;gene_name=CTD-3113P16.7
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10 19 processed_pseudogene exon 239145 239247 . - . Parent=ENST00000588755
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11 19 processed_pseudogene transcript 279495 280170 . + . ID=ENST00000589981;geneID=ENSG00000267447;gene_name=VN2R11P
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12 19 processed_pseudogene exon 279495 280170 . + . Parent=ENST00000589981
6
6ea09f60dee9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit 956566e1f7b4390719db56b7488a720ccad181a4"
iuc
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13 19 protein_coding transcript 281043 291386 . - . ID=ENST00000269812;geneID=ENSG00000141934;gene_name=PPAP2C
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14 19 protein_coding exon 281043 281537 . - . Parent=ENST00000269812
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15 19 protein_coding exon 282134 282310 . - . Parent=ENST00000269812
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16 19 protein_coding exon 282752 282809 . - . Parent=ENST00000269812
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17 19 protein_coding exon 287474 287751 . - . Parent=ENST00000269812
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18 19 protein_coding exon 288020 288171 . - . Parent=ENST00000269812
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19 19 protein_coding exon 291285 291386 . - . Parent=ENST00000269812
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6ea09f60dee9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit 956566e1f7b4390719db56b7488a720ccad181a4"
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20 19 protein_coding CDS 281388 281537 . - 0 Parent=ENST00000269812
0
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21 19 protein_coding CDS 282134 282310 . - 0 Parent=ENST00000269812
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22 19 protein_coding CDS 282752 282809 . - 1 Parent=ENST00000269812
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23 19 protein_coding CDS 287474 287751 . - 0 Parent=ENST00000269812
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24 19 protein_coding CDS 288020 288171 . - 2 Parent=ENST00000269812
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25 19 protein_coding CDS 291285 291336 . - 0 Parent=ENST00000269812
6
6ea09f60dee9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit 956566e1f7b4390719db56b7488a720ccad181a4"
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26 19 protein_coding transcript 281345 291393 . - . ID=ENST00000434325;geneID=ENSG00000141934;gene_name=PPAP2C
0
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27 19 protein_coding exon 281345 281537 . - . Parent=ENST00000434325
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28 19 protein_coding exon 282134 282310 . - . Parent=ENST00000434325
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29 19 protein_coding exon 282752 282809 . - . Parent=ENST00000434325
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30 19 protein_coding exon 287474 287751 . - . Parent=ENST00000434325
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31 19 protein_coding exon 288020 288171 . - . Parent=ENST00000434325
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32 19 protein_coding exon 291326 291393 . - . Parent=ENST00000434325
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6ea09f60dee9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit 956566e1f7b4390719db56b7488a720ccad181a4"
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33 19 protein_coding CDS 281388 281537 . - 0 Parent=ENST00000434325
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34 19 protein_coding CDS 282134 282310 . - 0 Parent=ENST00000434325
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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35 19 protein_coding CDS 282752 282809 . - 1 Parent=ENST00000434325
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36 19 protein_coding CDS 287474 287751 . - 0 Parent=ENST00000434325
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37 19 protein_coding CDS 288020 288055 . - 0 Parent=ENST00000434325
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6ea09f60dee9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit 956566e1f7b4390719db56b7488a720ccad181a4"
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38 19 protein_coding transcript 281388 291200 . - . ID=ENST00000327790;geneID=ENSG00000141934;gene_name=PPAP2C
0
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39 19 protein_coding exon 281388 281537 . - . Parent=ENST00000327790
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40 19 protein_coding exon 282134 282310 . - . Parent=ENST00000327790
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41 19 protein_coding exon 282752 282809 . - . Parent=ENST00000327790
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42 19 protein_coding exon 287474 287751 . - . Parent=ENST00000327790
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43 19 protein_coding exon 288020 288171 . - . Parent=ENST00000327790
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44 19 protein_coding exon 290952 291200 . - . Parent=ENST00000327790
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6ea09f60dee9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit 956566e1f7b4390719db56b7488a720ccad181a4"
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45 19 protein_coding CDS 281388 281537 . - 0 Parent=ENST00000327790
0
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46 19 protein_coding CDS 282134 282310 . - 0 Parent=ENST00000327790
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47 19 protein_coding CDS 282752 282809 . - 1 Parent=ENST00000327790
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48 19 protein_coding CDS 287474 287751 . - 0 Parent=ENST00000327790
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49 19 protein_coding CDS 288020 288171 . - 2 Parent=ENST00000327790
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50 19 protein_coding CDS 290952 291066 . - 0 Parent=ENST00000327790
6
6ea09f60dee9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit 956566e1f7b4390719db56b7488a720ccad181a4"
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51 19 protein_coding transcript 281991 287636 . - . ID=ENST00000586998;geneID=ENSG00000141934;gene_name=PPAP2C
0
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52 19 protein_coding exon 281991 282310 . - . Parent=ENST00000586998
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53 19 protein_coding exon 282752 282809 . - . Parent=ENST00000586998
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54 19 protein_coding exon 287474 287636 . - . Parent=ENST00000586998
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6ea09f60dee9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit 956566e1f7b4390719db56b7488a720ccad181a4"
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55 19 protein_coding CDS 282122 282310 . - 0 Parent=ENST00000586998
0
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56 19 protein_coding CDS 282752 282809 . - 1 Parent=ENST00000586998
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57 19 protein_coding CDS 287474 287636 . - 2 Parent=ENST00000586998
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58 19 retained_intron transcript 287161 288530 . - . ID=ENST00000589672;geneID=ENSG00000141934;gene_name=PPAP2C
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59 19 retained_intron exon 287161 287751 . - . Parent=ENST00000589672
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60 19 retained_intron exon 288020 288530 . - . Parent=ENST00000589672
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6ea09f60dee9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit 956566e1f7b4390719db56b7488a720ccad181a4"
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61 19 protein_coding transcript 287474 291382 . - . ID=ENST00000591572;geneID=ENSG00000141934;gene_name=PPAP2C
0
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62 19 protein_coding exon 287474 287751 . - . Parent=ENST00000591572
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63 19 protein_coding exon 288020 288189 . - . Parent=ENST00000591572
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64 19 protein_coding exon 291285 291382 . - . Parent=ENST00000591572
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65 19 protein_coding CDS 287474 287751 . - 0 Parent=ENST00000591572
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66 19 protein_coding CDS 288020 288189 . - 2 Parent=ENST00000591572
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67 19 protein_coding CDS 291285 291336 . - 0 Parent=ENST00000591572
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68 19 antisense transcript 305573 306467 . + . ID=ENST00000591533;geneID=ENSG00000267124;gene_name=CTD-3113P16.5
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69 19 antisense exon 305573 305703 . + . Parent=ENST00000591533
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70 19 antisense exon 306057 306467 . + . Parent=ENST00000591533
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6ea09f60dee9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit 956566e1f7b4390719db56b7488a720ccad181a4"
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71 19 protein_coding transcript 305575 344793 . - . ID=ENST00000264819;geneID=ENSG00000105556;gene_name=MIER2
0
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72 19 protein_coding exon 305575 306711 . - . Parent=ENST00000264819
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73 19 protein_coding exon 307119 307536 . - . Parent=ENST00000264819
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74 19 protein_coding exon 308577 308665 . - . Parent=ENST00000264819
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75 19 protein_coding exon 308801 308925 . - . Parent=ENST00000264819
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76 19 protein_coding exon 311845 311939 . - . Parent=ENST00000264819
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77 19 protein_coding exon 312191 312272 . - . Parent=ENST00000264819
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78 19 protein_coding exon 313492 313643 . - . Parent=ENST00000264819
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79 19 protein_coding exon 325635 325704 . - . Parent=ENST00000264819
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80 19 protein_coding exon 326507 326598 . - . Parent=ENST00000264819
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81 19 protein_coding exon 327133 327256 . - . Parent=ENST00000264819
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82 19 protein_coding exon 327864 327989 . - . Parent=ENST00000264819
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83 19 protein_coding exon 334400 334542 . - . Parent=ENST00000264819
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84 19 protein_coding exon 336083 336173 . - . Parent=ENST00000264819
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85 19 protein_coding exon 344774 344793 . - . Parent=ENST00000264819
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6ea09f60dee9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit 956566e1f7b4390719db56b7488a720ccad181a4"
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86 19 protein_coding CDS 306690 306711 . - 1 Parent=ENST00000264819
0
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87 19 protein_coding CDS 307119 307536 . - 2 Parent=ENST00000264819
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88 19 protein_coding CDS 308577 308665 . - 1 Parent=ENST00000264819
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89 19 protein_coding CDS 308801 308925 . - 0 Parent=ENST00000264819
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90 19 protein_coding CDS 311845 311939 . - 2 Parent=ENST00000264819
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91 19 protein_coding CDS 312191 312272 . - 0 Parent=ENST00000264819
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92 19 protein_coding CDS 313492 313643 . - 2 Parent=ENST00000264819
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93 19 protein_coding CDS 325635 325704 . - 0 Parent=ENST00000264819
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94 19 protein_coding CDS 326507 326598 . - 2 Parent=ENST00000264819
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95 19 protein_coding CDS 327133 327256 . - 0 Parent=ENST00000264819
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96 19 protein_coding CDS 327864 327989 . - 0 Parent=ENST00000264819
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97 19 protein_coding CDS 334400 334542 . - 2 Parent=ENST00000264819
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98 19 protein_coding CDS 336083 336173 . - 0 Parent=ENST00000264819
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99 19 protein_coding CDS 344774 344782 . - 0 Parent=ENST00000264819
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100 19 antisense transcript 305579 325706 . + . ID=ENST00000589092;geneID=ENSG00000267124;gene_name=CTD-3113P16.5
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101 19 antisense exon 305579 305934 . + . Parent=ENST00000589092
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102 19 antisense exon 325624 325706 . + . Parent=ENST00000589092
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103 19 retained_intron transcript 326607 336178 . - . ID=ENST00000586994;geneID=ENSG00000105556;gene_name=MIER2
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104 19 retained_intron exon 326607 327256 . - . Parent=ENST00000586994
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105 19 retained_intron exon 327864 327989 . - . Parent=ENST00000586994
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106 19 retained_intron exon 334400 334542 . - . Parent=ENST00000586994
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107 19 retained_intron exon 336083 336178 . - . Parent=ENST00000586994
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108 19 retained_intron transcript 327864 340599 . - . ID=ENST00000592722;geneID=ENSG00000105556;gene_name=MIER2
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109 19 retained_intron exon 327864 327989 . - . Parent=ENST00000592722
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110 19 retained_intron exon 330264 330380 . - . Parent=ENST00000592722
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111 19 retained_intron exon 334400 334542 . - . Parent=ENST00000592722
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112 19 retained_intron exon 336083 336173 . - . Parent=ENST00000592722
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113 19 retained_intron exon 340514 340599 . - . Parent=ENST00000592722
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114 19 retained_intron transcript 334115 344798 . - . ID=ENST00000587966;geneID=ENSG00000105556;gene_name=MIER2
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115 19 retained_intron exon 334115 334542 . - . Parent=ENST00000587966
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116 19 retained_intron exon 344774 344798 . - . Parent=ENST00000587966
6
6ea09f60dee9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit 956566e1f7b4390719db56b7488a720ccad181a4"
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117 19 protein_coding transcript 361750 376013 . - . ID=ENST00000342640;geneID=ENSG00000105549;gene_name=THEG
0
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118 19 protein_coding exon 361750 362426 . - . Parent=ENST00000342640
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119 19 protein_coding exon 367065 367224 . - . Parent=ENST00000342640
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120 19 protein_coding exon 371205 371322 . - . Parent=ENST00000342640
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121 19 protein_coding exon 372631 372700 . - . Parent=ENST00000342640
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122 19 protein_coding exon 373470 373531 . - . Parent=ENST00000342640
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123 19 protein_coding exon 373940 374011 . - . Parent=ENST00000342640
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124 19 protein_coding exon 374299 374421 . - . Parent=ENST00000342640
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125 19 protein_coding exon 375663 376013 . - . Parent=ENST00000342640
6
6ea09f60dee9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit 956566e1f7b4390719db56b7488a720ccad181a4"
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126 19 protein_coding CDS 362200 362426 . - 2 Parent=ENST00000342640
0
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127 19 protein_coding CDS 367065 367224 . - 0 Parent=ENST00000342640
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128 19 protein_coding CDS 371205 371322 . - 1 Parent=ENST00000342640
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129 19 protein_coding CDS 372631 372700 . - 2 Parent=ENST00000342640
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130 19 protein_coding CDS 373470 373531 . - 1 Parent=ENST00000342640
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131 19 protein_coding CDS 373940 374011 . - 1 Parent=ENST00000342640
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132 19 protein_coding CDS 374299 374421 . - 1 Parent=ENST00000342640
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133 19 protein_coding CDS 375663 375970 . - 0 Parent=ENST00000342640
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134 19 retained_intron transcript 362058 374620 . - . ID=ENST00000530711;geneID=ENSG00000105549;gene_name=THEG
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135 19 retained_intron exon 362058 362426 . - . Parent=ENST00000530711
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136 19 retained_intron exon 367065 367224 . - . Parent=ENST00000530711
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137 19 retained_intron exon 374299 374620 . - . Parent=ENST00000530711
6
6ea09f60dee9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit 956566e1f7b4390719db56b7488a720ccad181a4"
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138 19 protein_coding transcript 362200 375970 . - . ID=ENST00000346878;geneID=ENSG00000105549;gene_name=THEG
0
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139 19 protein_coding exon 362200 362426 . - . Parent=ENST00000346878
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140 19 protein_coding exon 367065 367224 . - . Parent=ENST00000346878
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141 19 protein_coding exon 371205 371322 . - . Parent=ENST00000346878
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142 19 protein_coding exon 372631 372700 . - . Parent=ENST00000346878
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143 19 protein_coding exon 373470 373531 . - . Parent=ENST00000346878
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144 19 protein_coding exon 374299 374421 . - . Parent=ENST00000346878
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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145 19 protein_coding exon 375663 375970 . - . Parent=ENST00000346878
6
6ea09f60dee9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit 956566e1f7b4390719db56b7488a720ccad181a4"
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146 19 protein_coding CDS 362200 362426 . - 2 Parent=ENST00000346878
0
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147 19 protein_coding CDS 367065 367224 . - 0 Parent=ENST00000346878
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148 19 protein_coding CDS 371205 371322 . - 1 Parent=ENST00000346878
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149 19 protein_coding CDS 372631 372700 . - 2 Parent=ENST00000346878
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150 19 protein_coding CDS 373470 373531 . - 1 Parent=ENST00000346878
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151 19 protein_coding CDS 374299 374421 . - 1 Parent=ENST00000346878
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152 19 protein_coding CDS 375663 375970 . - 0 Parent=ENST00000346878
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153 19 retained_intron transcript 367202 374249 . - . ID=ENST00000528213;geneID=ENSG00000105549;gene_name=THEG
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154 19 retained_intron exon 367202 367224 . - . Parent=ENST00000528213
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155 19 retained_intron exon 371205 371322 . - . Parent=ENST00000528213
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156 19 retained_intron exon 372631 372700 . - . Parent=ENST00000528213
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157 19 retained_intron exon 373470 373531 . - . Parent=ENST00000528213
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158 19 retained_intron exon 373940 374249 . - . Parent=ENST00000528213
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159 19 processed_transcript transcript 397589 398941 . + . ID=ENST00000591757;geneID=ENSG00000267443;gene_name=AC010641.1
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160 19 processed_transcript exon 397589 397633 . + . Parent=ENST00000591757
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161 19 processed_transcript exon 398690 398941 . + . Parent=ENST00000591757
6
6ea09f60dee9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit 956566e1f7b4390719db56b7488a720ccad181a4"
iuc
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162 19 protein_coding transcript 405445 409139 . - . ID=ENST00000332235;geneID=ENSG00000183186;gene_name=C2CD4C
0
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163 19 protein_coding exon 405445 408401 . - . Parent=ENST00000332235
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164 19 protein_coding exon 409006 409139 . - . Parent=ENST00000332235
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6ea09f60dee9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit 956566e1f7b4390719db56b7488a720ccad181a4"
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165 19 protein_coding CDS 407096 408361 . - 0 Parent=ENST00000332235
0
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166 19 retained_intron transcript 416583 419879 . - . ID=ENST00000587423;geneID=ENSG00000129946;gene_name=SHC2
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167 19 retained_intron exon 416583 417322 . - . Parent=ENST00000587423
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168 19 retained_intron exon 418923 419879 . - . Parent=ENST00000587423
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169 19 retained_intron transcript 416583 422828 . - . ID=ENST00000588376;geneID=ENSG00000129946;gene_name=SHC2
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170 19 retained_intron exon 416583 417322 . - . Parent=ENST00000588376
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171 19 retained_intron exon 418923 419056 . - . Parent=ENST00000588376
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172 19 retained_intron exon 422146 422828 . - . Parent=ENST00000588376
6
6ea09f60dee9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit 956566e1f7b4390719db56b7488a720ccad181a4"
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173 19 protein_coding transcript 416593 460996 . - . ID=ENST00000264554;geneID=ENSG00000129946;gene_name=SHC2
0
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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174 19 protein_coding exon 416593 417322 . - . Parent=ENST00000264554
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175 19 protein_coding exon 418923 419056 . - . Parent=ENST00000264554
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176 19 protein_coding exon 422146 422456 . - . Parent=ENST00000264554
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177 19 protein_coding exon 425097 425231 . - . Parent=ENST00000264554
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178 19 protein_coding exon 430684 430747 . - . Parent=ENST00000264554
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179 19 protein_coding exon 434709 434865 . - . Parent=ENST00000264554
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180 19 protein_coding exon 436165 436291 . - . Parent=ENST00000264554
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181 19 protein_coding exon 436380 436431 . - . Parent=ENST00000264554
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182 19 protein_coding exon 436630 436683 . - . Parent=ENST00000264554
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183 19 protein_coding exon 438718 438837 . - . Parent=ENST00000264554
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184 19 protein_coding exon 438970 439030 . - . Parent=ENST00000264554
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185 19 protein_coding exon 440862 440932 . - . Parent=ENST00000264554
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186 19 protein_coding exon 460529 460996 . - . Parent=ENST00000264554
6
6ea09f60dee9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit 956566e1f7b4390719db56b7488a720ccad181a4"
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187 19 protein_coding CDS 418928 419056 . - 0 Parent=ENST00000264554
0
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188 19 protein_coding CDS 422146 422456 . - 2 Parent=ENST00000264554
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189 19 protein_coding CDS 425097 425231 . - 2 Parent=ENST00000264554
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190 19 protein_coding CDS 430684 430747 . - 0 Parent=ENST00000264554
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191 19 protein_coding CDS 434709 434865 . - 1 Parent=ENST00000264554
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192 19 protein_coding CDS 436165 436291 . - 2 Parent=ENST00000264554
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193 19 protein_coding CDS 436380 436431 . - 0 Parent=ENST00000264554
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194 19 protein_coding CDS 436630 436683 . - 0 Parent=ENST00000264554
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195 19 protein_coding CDS 438718 438837 . - 0 Parent=ENST00000264554
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196 19 protein_coding CDS 438970 439030 . - 1 Parent=ENST00000264554
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197 19 protein_coding CDS 440862 440932 . - 0 Parent=ENST00000264554
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198 19 protein_coding CDS 460529 460996 . - 0 Parent=ENST00000264554
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199 19 retained_intron transcript 416609 441384 . - . ID=ENST00000589922;geneID=ENSG00000129946;gene_name=SHC2
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200 19 retained_intron exon 416609 417322 . - . Parent=ENST00000589922
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201 19 retained_intron exon 418923 419056 . - . Parent=ENST00000589922
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202 19 retained_intron exon 422146 422456 . - . Parent=ENST00000589922
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203 19 retained_intron exon 425097 425231 . - . Parent=ENST00000589922
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204 19 retained_intron exon 430684 430747 . - . Parent=ENST00000589922
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205 19 retained_intron exon 434709 434865 . - . Parent=ENST00000589922
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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206 19 retained_intron exon 436165 436291 . - . Parent=ENST00000589922
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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207 19 retained_intron exon 436380 436683 . - . Parent=ENST00000589922
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208 19 retained_intron exon 438718 438837 . - . Parent=ENST00000589922
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209 19 retained_intron exon 438970 439030 . - . Parent=ENST00000589922
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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210 19 retained_intron exon 440862 441384 . - . Parent=ENST00000589922
6
6ea09f60dee9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit 956566e1f7b4390719db56b7488a720ccad181a4"
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211 19 nonsense_mediated_decay transcript 417200 436258 . - . ID=ENST00000590170;geneID=ENSG00000129946;gene_name=SHC2
0
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212 19 nonsense_mediated_decay exon 417200 417322 . - . Parent=ENST00000590170
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213 19 nonsense_mediated_decay exon 418923 419056 . - . Parent=ENST00000590170
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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214 19 nonsense_mediated_decay exon 422146 422379 . - . Parent=ENST00000590170
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215 19 nonsense_mediated_decay exon 430684 430747 . - . Parent=ENST00000590170
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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216 19 nonsense_mediated_decay exon 434709 434865 . - . Parent=ENST00000590170
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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217 19 nonsense_mediated_decay exon 436165 436258 . - . Parent=ENST00000590170
6
6ea09f60dee9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit 956566e1f7b4390719db56b7488a720ccad181a4"
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218 19 nonsense_mediated_decay CDS 434762 434865 . - 2 Parent=ENST00000590170
0
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219 19 nonsense_mediated_decay CDS 436165 436258 . - 0 Parent=ENST00000590170
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220 19 processed_transcript transcript 417200 436258 . - . ID=ENST00000591948;geneID=ENSG00000129946;gene_name=SHC2
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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221 19 processed_transcript exon 417200 417322 . - . Parent=ENST00000591948
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222 19 processed_transcript exon 418923 419056 . - . Parent=ENST00000591948
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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223 19 processed_transcript exon 422146 422379 . - . Parent=ENST00000591948
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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224 19 processed_transcript exon 430684 430747 . - . Parent=ENST00000591948
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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225 19 processed_transcript exon 434709 434865 . - . Parent=ENST00000591948
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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226 19 processed_transcript exon 436165 436258 . - . Parent=ENST00000591948
6
6ea09f60dee9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit 956566e1f7b4390719db56b7488a720ccad181a4"
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227 19 nonsense_mediated_decay transcript 434702 460571 . - . ID=ENST00000590222;geneID=ENSG00000129946;gene_name=SHC2
0
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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228 19 nonsense_mediated_decay exon 434702 434865 . - . Parent=ENST00000590222
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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229 19 nonsense_mediated_decay exon 436165 436291 . - . Parent=ENST00000590222
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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230 19 nonsense_mediated_decay exon 436380 436431 . - . Parent=ENST00000590222
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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231 19 nonsense_mediated_decay exon 436630 436683 . - . Parent=ENST00000590222
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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232 19 nonsense_mediated_decay exon 438718 438837 . - . Parent=ENST00000590222
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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233 19 nonsense_mediated_decay exon 438970 439030 . - . Parent=ENST00000590222
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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234 19 nonsense_mediated_decay exon 439233 439491 . - . Parent=ENST00000590222
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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235 19 nonsense_mediated_decay exon 440862 440932 . - . Parent=ENST00000590222
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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236 19 nonsense_mediated_decay exon 460529 460571 . - . Parent=ENST00000590222
6
6ea09f60dee9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit 956566e1f7b4390719db56b7488a720ccad181a4"
iuc
parents: 0
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237 19 nonsense_mediated_decay CDS 439398 439491 . - 1 Parent=ENST00000590222
0
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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238 19 nonsense_mediated_decay CDS 440862 440932 . - 0 Parent=ENST00000590222
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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239 19 nonsense_mediated_decay CDS 460529 460571 . - 1 Parent=ENST00000590222
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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240 19 retained_intron transcript 435771 436534 . - . ID=ENST00000591388;geneID=ENSG00000129946;gene_name=SHC2
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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241 19 retained_intron exon 435771 435961 . - . Parent=ENST00000591388
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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242 19 retained_intron exon 436165 436291 . - . Parent=ENST00000591388
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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243 19 retained_intron exon 436380 436534 . - . Parent=ENST00000591388
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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244 19 processed_transcript transcript 435779 439031 . - . ID=ENST00000590113;geneID=ENSG00000129946;gene_name=SHC2
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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245 19 processed_transcript exon 435779 435961 . - . Parent=ENST00000590113
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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246 19 processed_transcript exon 436165 436291 . - . Parent=ENST00000590113
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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247 19 processed_transcript exon 436380 436431 . - . Parent=ENST00000590113
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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248 19 processed_transcript exon 436630 436683 . - . Parent=ENST00000590113
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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249 19 processed_transcript exon 438718 438837 . - . Parent=ENST00000590113
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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250 19 processed_transcript exon 438970 439031 . - . Parent=ENST00000590113
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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251 19 rRNA transcript 453134 453245 . + . ID=ENST00000516730;geneID=ENSG00000252539;gene_name=RNA5SP462
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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252 19 rRNA exon 453134 453245 . + . Parent=ENST00000516730
6
6ea09f60dee9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit 956566e1f7b4390719db56b7488a720ccad181a4"
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253 19 protein_coding transcript 463346 474983 . - . ID=ENST00000315489;geneID=ENSG00000181781;gene_name=ODF3L2
0
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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254 19 protein_coding exon 463346 464364 . - . Parent=ENST00000315489
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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255 19 protein_coding exon 467649 467762 . - . Parent=ENST00000315489
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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256 19 protein_coding exon 472394 472501 . - . Parent=ENST00000315489
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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257 19 protein_coding exon 474621 474983 . - . Parent=ENST00000315489
6
6ea09f60dee9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit 956566e1f7b4390719db56b7488a720ccad181a4"
iuc
parents: 0
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258 19 protein_coding CDS 463844 464364 . - 2 Parent=ENST00000315489
0
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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259 19 protein_coding CDS 467649 467762 . - 2 Parent=ENST00000315489
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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260 19 protein_coding CDS 472394 472501 . - 2 Parent=ENST00000315489
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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261 19 protein_coding CDS 474621 474747 . - 0 Parent=ENST00000315489
6
6ea09f60dee9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit 956566e1f7b4390719db56b7488a720ccad181a4"
iuc
parents: 0
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262 19 protein_coding transcript 463467 474880 . - . ID=ENST00000382696;geneID=ENSG00000181781;gene_name=ODF3L2
0
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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263 19 protein_coding exon 463467 464364 . - . Parent=ENST00000382696
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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264 19 protein_coding exon 467649 467762 . - . Parent=ENST00000382696
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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265 19 protein_coding exon 474621 474880 . - . Parent=ENST00000382696
6
6ea09f60dee9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit 956566e1f7b4390719db56b7488a720ccad181a4"
iuc
parents: 0
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266 19 protein_coding CDS 463844 464364 . - 2 Parent=ENST00000382696
0
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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267 19 protein_coding CDS 467649 467762 . - 2 Parent=ENST00000382696
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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268 19 protein_coding CDS 474621 474747 . - 0 Parent=ENST00000382696
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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269 19 retained_intron transcript 464146 472631 . - . ID=ENST00000591681;geneID=ENSG00000181781;gene_name=ODF3L2
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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270 19 retained_intron exon 464146 464364 . - . Parent=ENST00000591681
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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271 19 retained_intron exon 467649 467762 . - . Parent=ENST00000591681
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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272 19 retained_intron exon 472394 472631 . - . Parent=ENST00000591681
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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273 19 processed_transcript transcript 489176 505342 . + . ID=ENST00000587541;geneID=ENSG00000099866;gene_name=MADCAM1
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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274 19 processed_transcript exon 489176 490039 . + . Parent=ENST00000587541
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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275 19 processed_transcript exon 501669 501929 . + . Parent=ENST00000587541
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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276 19 processed_transcript exon 504745 505342 . + . Parent=ENST00000587541
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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277 19 antisense transcript 490046 507813 . - . ID=ENST00000592413;geneID=ENSG00000266933;gene_name=AC005775.2
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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278 19 antisense exon 490046 490353 . - . Parent=ENST00000592413
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279 19 antisense exon 501541 501624 . - . Parent=ENST00000592413
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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280 19 antisense exon 507376 507813 . - . Parent=ENST00000592413
6
6ea09f60dee9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit 956566e1f7b4390719db56b7488a720ccad181a4"
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parents: 0
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281 19 protein_coding transcript 496454 505207 . + . ID=ENST00000346144;geneID=ENSG00000099866;gene_name=MADCAM1
0
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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282 19 protein_coding exon 496454 496551 . + . Parent=ENST00000346144
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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283 19 protein_coding exon 497833 498117 . + . Parent=ENST00000346144
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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284 19 protein_coding exon 498496 498825 . + . Parent=ENST00000346144
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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diff changeset
285 19 protein_coding exon 504745 505207 . + . Parent=ENST00000346144
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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286 19 protein_coding CDS 496500 496551 . + 0 Parent=ENST00000346144
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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287 19 protein_coding CDS 497833 498117 . + 2 Parent=ENST00000346144
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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288 19 protein_coding CDS 498496 498825 . + 2 Parent=ENST00000346144
6
6ea09f60dee9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit 956566e1f7b4390719db56b7488a720ccad181a4"
iuc
parents: 0
diff changeset
289 19 protein_coding CDS 504745 504965 . + 2 Parent=ENST00000346144
6ea09f60dee9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit 956566e1f7b4390719db56b7488a720ccad181a4"
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parents: 0
diff changeset
290 19 protein_coding transcript 496454 505347 . + . ID=ENST00000215637;geneID=ENSG00000099866;gene_name=MADCAM1
0
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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291 19 protein_coding exon 496454 496551 . + . Parent=ENST00000215637
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
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parents:
diff changeset
292 19 protein_coding exon 497833 498117 . + . Parent=ENST00000215637
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
devteam
parents:
diff changeset
293 19 protein_coding exon 498496 498825 . + . Parent=ENST00000215637
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
devteam
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diff changeset
294 19 protein_coding exon 501669 501929 . + . Parent=ENST00000215637
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
devteam
parents:
diff changeset
295 19 protein_coding exon 504745 505347 . + . Parent=ENST00000215637
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
devteam
parents:
diff changeset
296 19 protein_coding CDS 496500 496551 . + 0 Parent=ENST00000215637
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
devteam
parents:
diff changeset
297 19 protein_coding CDS 497833 498117 . + 2 Parent=ENST00000215637
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
devteam
parents:
diff changeset
298 19 protein_coding CDS 498496 498825 . + 2 Parent=ENST00000215637
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
devteam
parents:
diff changeset
299 19 protein_coding CDS 501669 501929 . + 2 Parent=ENST00000215637
6
6ea09f60dee9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit 956566e1f7b4390719db56b7488a720ccad181a4"
iuc
parents: 0
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300 19 protein_coding CDS 504745 504965 . + 2 Parent=ENST00000215637
6ea09f60dee9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit 956566e1f7b4390719db56b7488a720ccad181a4"
iuc
parents: 0
diff changeset
301 19 protein_coding transcript 496500 504965 . + . ID=ENST00000382683;geneID=ENSG00000099866;gene_name=MADCAM1
0
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
devteam
parents:
diff changeset
302 19 protein_coding exon 496500 496551 . + . Parent=ENST00000382683
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
devteam
parents:
diff changeset
303 19 protein_coding exon 498496 498825 . + . Parent=ENST00000382683
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
devteam
parents:
diff changeset
304 19 protein_coding exon 504745 504965 . + . Parent=ENST00000382683
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
devteam
parents:
diff changeset
305 19 protein_coding CDS 496500 496551 . + 0 Parent=ENST00000382683
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
devteam
parents:
diff changeset
306 19 protein_coding CDS 498496 498825 . + 2 Parent=ENST00000382683
6
6ea09f60dee9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit 956566e1f7b4390719db56b7488a720ccad181a4"
iuc
parents: 0
diff changeset
307 19 protein_coding CDS 504745 504965 . + 2 Parent=ENST00000382683
6ea09f60dee9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit 956566e1f7b4390719db56b7488a720ccad181a4"
iuc
parents: 0
diff changeset
308 19 protein_coding transcript 507299 519654 . + . ID=ENST00000359315;geneID=ENSG00000141933;gene_name=TPGS1
0
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
devteam
parents:
diff changeset
309 19 protein_coding exon 507299 507844 . + . Parent=ENST00000359315
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
devteam
parents:
diff changeset
310 19 protein_coding exon 518889 519654 . + . Parent=ENST00000359315
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
devteam
parents:
diff changeset
311 19 protein_coding CDS 507507 507844 . + 0 Parent=ENST00000359315
6
6ea09f60dee9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffread commit 956566e1f7b4390719db56b7488a720ccad181a4"
iuc
parents: 0
diff changeset
312 19 protein_coding CDS 518889 519423 . + 1 Parent=ENST00000359315
0
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
devteam
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diff changeset
313 19 retained_intron transcript 507500 510372 . + . ID=ENST00000588278;geneID=ENSG00000141933;gene_name=TPGS1
5f6e6582c01d planemo upload commit a52cc16ed8d0d60e99742b55fccbdedcbb64b82c
devteam
parents:
diff changeset
314 19 retained_intron exon 507500 510372 . + . Parent=ENST00000588278